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    70 repositories

    • seed-microbiome-traits

      Public
      R
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • tamipami

      Public
      A tool for finding the TAM and PAM sites of new Cas and transposon endonucleases from NGS screens
      Python
      •
      Other
      •1•1•1•0•Updated Nov 12, 2024Nov 12, 2024

    • SugarcaneCrossingTool

      Public
      R
      •0•0•5•0•Updated Nov 11, 2024Nov 11, 2024

    • crossword

      Public
      R
      •2•3•4•0•Updated Oct 9, 2024Oct 9, 2024

    • Pepper_TrioBinning

      Public
      Other
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • itsxpress

      Public
      Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
      Python
      •
      Other
      •9•12•1•0•Updated Sep 23, 2024Sep 23, 2024

    • sewrl_stinkbug_diet

      Public
      A project to demultiplex and analize
      Shell
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • Wheat_glaucousness_mapping

      Public
      R
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • PanPipes

      Public
      Test sets and pipeline scripts for pan-genomic graph analysis
      Python
      •2•16•0•0•Updated Aug 22, 2024Aug 22, 2024

    • ITS_HMMs

      Public
      This is a versioned data collection containing a collection of HMMER models to identify the ends of ITS sequences.
      0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • GuideMaker

      Public
      GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
      microbiologycrispr-casguidemaker
      Python
      •
      Other
      •3•6•1•6•Updated Jul 9, 2024Jul 9, 2024

    • GEERU_workshop

      Public
      thoe 2024 GEERU/MSU scoping workshop in Starkville, MS
      0•2•0•0•Updated May 22, 2024May 22, 2024

    • DigitalPhenotyping

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 7, 2024May 7, 2024

    • FruitQuality

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 3, 2024May 3, 2024

    • itsxpress-tutorial

      Public
      A tutorial for the QIIME2 forum
      1•2•1•0•Updated Apr 15, 2024Apr 15, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • QTLsurge

      Public
      Software for iterative genotyping design in a QTL-seq experiment
      Perl
      •
      MIT License
      •1•4•1•0•Updated Feb 25, 2024Feb 25, 2024

    • itsxpress-paper

      Public
      Code supporting the paper "ITSxpress: software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis"
      Shell
      •
      Other
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • Wheat_Genome_Assembly

      Public
      0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • audio-phenotyping-brapi-backend

      Public
      BrAPI based API back-end for transferring audio and other log files to a Breedbase instance
      brapibreedbasebrapi-phenotyping
      JavaScript
      •1•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • depthai-python

      Public
      DepthAI Python Library
      C++
      •
      MIT License
      •193•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • branchwater-web

      Public
      web app for search of SRA with Mastiff
      HTML
      •0•2•0•0•Updated Jan 21, 2024Jan 21, 2024

    • MicroMPN_data-files

      Public
      Jupyter Notebook
      •
      Other
      •1•0•0•0•Updated Jan 2, 2024Jan 2, 2024

    • q2_itsxpress

      Public archive
      A plugin for qiime2 that runs ITSxpress
      Python
      •
      Other
      •5•7•4•0•Updated Dec 19, 2023Dec 19, 2023

    • Grass_annotation_pipeline

      Public
      Shell
      •0•3•0•0•Updated Oct 4, 2023Oct 4, 2023

    • Ssec_Raleigh

      Public
      Developing reference genome assembly for Stenotaphrum secundatum cultivar Raleigh
      Shell
      •0•1•0•0•Updated Sep 1, 2023Sep 1, 2023

    • meta_ML

      Public
      Metagenomics machine learning project for retreat codathon
      Jupyter Notebook
      •0•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • xmfa_tools

      Public
      utilities for interacting with XMFA files
      Perl
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 28, 2023Jul 28, 2023

    • shortkmercapture

      Public
      tools to design short kmers probes to enrich non-host DNA in metagenomes.
      Python
      •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • micrompn

      Public
      MicroMPN: A Python command line program for automating most probable number (MPN) estimates in microtiter plates
      Python
      •
      Other
      •1•0•0•0•Updated Jun 12, 2023Jun 12, 2023