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@VU-QCB Vanderbilt University Quantitative & Chemical Biology Program

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    11 repositories

    • CP_2023

      Public
      Lior Pachter lab - Specious Art of scRNA-seq
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •5•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • CCLE_heterogeneity

      Public
      Pan-cancer single-cell RNA-seq identifies recurring programs of cellular heterogeneity. Nat Genet. 2020; 52(11) 1208-1218. doi:10.1038/s41588-020-00726-6
      R
      •16•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • diamantopoulou-ctc-dynamics

      Public
      R
      •3•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • single_cell_classification

      Public
      Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
      R
      •8•0•0•0•Updated Nov 26, 2022Nov 26, 2022

    • SSIT

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •8•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • mitocheck_data

      Public
      All information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •5•0•0•0•Updated Nov 2, 2022Nov 2, 2022

    • vu-qcb.github.io

      Public
      The GitHub home page of Vanderbilt's Quantitative & Chemical Biology Program
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 22, 2022Sep 22, 2022

    • PDAB_public

      Public
      Public repository for VU-QCB PDAB class
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 19, 2022Sep 19, 2022

    • .github

      Public
      Vanderbilt University Quantitative & Chemical Biology Program Public GitHub Repository
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • singlecell_endodiff_paper

      Public
      Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
      Jupyter Notebook
      •
      Apache License 2.0
      •6•0•0•0•Updated Jul 27, 2022Jul 27, 2022

    • mutex-watershed

      Public
      The mutex watershed for image segmentation.
      Python
      •13•0•0•0•Updated May 6, 2021May 6, 2021