Repositories list

• ARE2

  Public
  ARE2 for TACL

  Python

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• RENEE

  Public
  A comprehensive quality-control and quantification RNA-seq pipeline

  Python

  •

  MIT License

  •4•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• XAVIER

  Public
  An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

  Python

  •

  MIT License

  •3•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• Dockers

  Public
  A collection of Dockerfiles to facilitate reproducibility across computing environments.

  Dockerfile

  •3•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• Super-resolution-web

  Public
  Python

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• SAIP

  Public
  Small Animal Image Portal

  JavaScript

  •0•0•0•11•Updated Nov 5, 2024Nov 5, 2024

• SF_LR_scRNA

  Public
  R

  •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• SF_Downstream_RNA-seq

  Public
  RNA-Seq Downstream Differential Gene Expression and Gene Set Enrichment Analysis

  R

  •

  MIT License

  •1•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• abcsFrederick.github.io

  Public
  This is the repo for the official abcsFrederick IO webpage.

  0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• CRUISE

  Public
  Crispr scReen seqUencIng analySis pipEline

  Nextflow

  •

  MIT License

  •3•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• Oncogenomics_NF_WF

  Public
  Nextflow

  •1•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• bss-tracker

  Public
  JavaScript

  •1•0•0•2•Updated Oct 16, 2024Oct 16, 2024

• CARLISLE

  Public
  Cut And Run Analysis Pipeline

  Python

  •

  MIT License

  •4•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• spacesavers2

  Public
  Python

  •1•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• ASPEN

  Public
  CCBR pipeline for preliminary QC and peak calling from ATACseq datasets

  Shell

  •

  MIT License

  •2•0•0•0•Updated Sep 14, 2024Sep 14, 2024

• CCBR_NextflowTemplate

  Public template
  CCBR template for Nextflow workflows

  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Sep 14, 2024Sep 14, 2024

• CHAMPAGNE

  Public
  CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

  Nextflow

  •

  MIT License

  •2•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• l2p

  Public
  List to pathway, or l2p, is an R package for gene set enrichment analysis that is optimized for speed.

  C

  •

  MIT License

  •2•0•0•0•Updated Aug 24, 2024Aug 24, 2024

• RadiologyTK-Jenkins-Pipeline

  Public
  0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• SSR_task

  Public
  Tasks on SSR platform

  Python

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• LOGAN

  Public
  Nextflow

  •

  MIT License

  •4•0•0•0•Updated Aug 17, 2024Aug 17, 2024

• iCLIP_V3

  Public
  Stable release for iCLIP V3

  Nextflow

  •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• NCI-RBL-Dockers

  Public
  A repository of recipes for Docker containers built for the NCI-RBL

  C

  •2•0•0•0•Updated Jul 19, 2024Jul 19, 2024

• TRANQUIL

  Public
  TRANQUIL (TRna AbundaNce QUantification pIpeLine)

  Shell

  •

  MIT License

  •1•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• CCBR_SnakemakeTemplate

  Public template
  Barebones framework for creating new snakemake workflows.

  Shell

  •

  MIT License

  •1•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• METRO

  Public
  Mouse nEoanTigen pRedictOr

  Python

  •

  MIT License

  •2•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• POB_snMultiome_pipeline

  Public
  This is the repo for snMultiome pipeline

  R

  •

  MIT License

  •1•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• fruitsc

  Public
  Snakemake pipeline for analysis of Hi-C data

  Shell

  •

  MIT License

  •1•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• Archive

  Public
  Python

  •0•0•0•1•Updated Jun 18, 2024Jun 18, 2024

• SSR

  Public
  JavaScript

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024