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    51 repositories

    • inventory-prototype-react

      Public
      JavaScript
      •0•0•0•71•Updated Nov 10, 2024Nov 10, 2024

    • nemo

      Public
      A protocol editor and testing extension for VS Code
      JavaScript
      •0•0•11•36•Updated Nov 9, 2024Nov 9, 2024

    • inventory-prototype-rails

      Public
      Prototype app for new inventory model
      Ruby
      •0•0•2•51•Updated Nov 9, 2024Nov 9, 2024

    • aquarium

      Public
      The Aquarium Lab Operating System
      biologylimslabmolecularprotocols
      Ruby
      •
      MIT License
      •15•58•244•32•Updated Nov 2, 2024Nov 2, 2024

    • aq-search-prototype

      Public
      Python-based prototype for Aquarium search
      Python
      •0•0•0•5•Updated Nov 2, 2024Nov 2, 2024

    • ola-image-processing

      Public
      Image processing server from OLA-Simple project
      Python
      •
      MIT License
      •0•0•0•56•Updated Oct 30, 2024Oct 30, 2024

    • cuttlefish

      Public
      dashboard for projects in aquarium
      JavaScript
      •
      MIT License
      •1•2•2•35•Updated Oct 10, 2024Oct 10, 2024

    • krill-blockly

      Public
      A not-entirely-reasonable idea of how writing Aquarium protocols should be.
      JavaScript
      •
      Apache License 2.0
      •0•0•0•10•Updated Sep 6, 2024Sep 6, 2024

    • aquarium-opil

      Public
      Python interface for using OPIL with Aquarium
      Python
      •
      MIT License
      •0•0•2•33•Updated Aug 21, 2024Aug 21, 2024

    • menagerie

      Public
      A generalized scriptable planner interface for Aquarium
      Python
      •
      Other
      •0•0•0•6•Updated Jul 20, 2024Jul 20, 2024

    • pfish

      Public
      Scripts for pulling/pushing protocols/libraries to/from Aquarium.
      Python
      •1•2•21•9•Updated Jul 16, 2024Jul 16, 2024

    • pydent

      Public
      Scripting APIs for Aquarium
      Python
      •
      MIT License
      •2•6•12•17•Updated Jul 16, 2024Jul 16, 2024

    • experiment-request

      Public
      Python package for describing experiments
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 10, 2024Jul 10, 2024

    • devcontainer-template

      Public
      Python
      •
      Other
      •0•0•0•1•Updated Jul 10, 2024Jul 10, 2024

    • aq-react

      Public
      New react-app shell for aquarium rebuild
      JavaScript
      •0•0•0•21•Updated Jul 5, 2023Jul 5, 2023

    • protocols-to-edit

      Public
      Protocols for which the BIOFAB has requested edits
      Ruby
      •1•1•0•2•Updated Dec 26, 2021Dec 26, 2021

    • aquariumbio.github.io

      Public
      home of the Aquarium.bio organization page
      Dockerfile
      •
      MIT License
      •0•0•0•1•Updated Aug 20, 2021Aug 20, 2021

    • aquadoc-v2

      Public
      A tool for generating documentation for Aquarium workflows
      Ruby
      •0•0•0•0•Updated Jul 7, 2021Jul 7, 2021

    • krill-service

      Public
      Independent krill service
      MIT License
      •0•0•0•0•Updated Jun 29, 2021Jun 29, 2021

    • pfish-tools

      Public
      Tools for working with pfish
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 29, 2021Jun 29, 2021

    • protocol-base

      Public
      Consolidated general purpose libraries for biology protocols in Aquarium
      Ruby
      •
      MIT License
      •0•0•2•0•Updated Jun 22, 2021Jun 22, 2021

    • aquarium-local

      Public
      Docker configuration for running Aquarium with a local (non-deployment) configuration
      Shell
      •
      MIT License
      •2•2•2•0•Updated May 25, 2021May 25, 2021

    • covid19-test

      Public
      COVID-19 Molecular Diagnostics: An Aquarium Workflow
      Ruby
      •
      MIT License
      •1•1•0•0•Updated May 25, 2021May 25, 2021

    • aq-genome-center

      Public
      Workflows for the aquarium genome center
      Ruby
      •0•0•0•0•Updated May 20, 2021May 20, 2021

    • Kits

      Public
      Kits or groups of items that come as a kit
      Ruby
      •0•0•0•0•Updated May 18, 2021May 18, 2021

    • aq-liquid-handling-robots

      Public
      A library for liquid handling robots
      Ruby
      •0•1•0•0•Updated May 7, 2021May 7, 2021

    • amplicon-ngs-prep

      Public
      Aquarium Amplicon NGS Prep: An Aquarium Workflow
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 4, 2021May 4, 2021

    • aq-compositions

      Public
      composition libraries
      Ruby
      •0•0•0•1•Updated Apr 16, 2021Apr 16, 2021

    • Containers

      Public
      A container that tracks the volume of items.
      Ruby
      •0•0•0•0•Updated Apr 16, 2021Apr 16, 2021

    • paml-python

      Public
      aquarium.bio prototype implementation of PAML
      MIT License
      •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021