Repositories list

• Metabolic_health_Cellsystems

  Public
  R

  •0•0•0•0•Updated Jun 1, 2024Jun 1, 2024

• Sorrentino_gastroJournal_2020

  Public
  R

  •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

• Yildiz_eLife_2023

  Public
  Scripts and data used in the paper "Hepatic lipid overload triggers biliary epithelial cell activation via E2Fs"

  R

  •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

• elife_gut_paper

  Public
  Scripts and data used in the paper Genetic and dietary modulators of the inflammatory response in the gastro-intestinal tract of the BXD mouse genetic reference population

  R

  •1•0•0•0•Updated Sep 5, 2023Sep 5, 2023

• dox-9tb-mouse-metagenomic-analysis-01

  Public
  Impact of two tetracycline compounds on fecal microbial communities of mice before and after infection with Influenza A virus

  HTML

  •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022

• ena-utils

  Public
  A simple CLI toolbox to use the European Nucleotide Archive (ENA)

  Python

  •

  Other

  •0•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• bxd-fasted-gene-expression-bat-microarray-r1858

  Public
  Generate expression matrix from microarray data derived from BXD brown adipose tissue

  gene-expressionbatbxd+ 1fasted-study

  HTML

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• bxd-fasted-gene-expression-liver-microarray-r5728

  Public
  Generate expression matrix from microarray data derived from BXD liver

  gene-expressionliverbxd+ 1fasted-study

  HTML

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• bxd-fasted-gene-expression-quadriceps-microarray-r1833

  Public
  Generate expression matrix from microarray data derived from BXD quadriceps

  gene-expressionbxdfasted-study+ 1quadriceps

  HTML

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• bxd-fasted-gene-expression-scwat-microarray-r5652

  Public
  Generate expression matrix from microarray data derived from BXD subcutaneous adipose tissue

  gene-expressionbxdscwat+ 1fasted-study

  HTML

  •0•0•0•0•Updated Jun 24, 2021Jun 24, 2021

• bxd-microarray-probe-mask

  Public
  Create microarray probes kill lists for polymorphic targets in the BXD mouse population

  HTML

  •0•0•0•0•Updated May 3, 2021May 3, 2021

• renku-project-template

  Public
  A repository for default Renku project templates.

  Dockerfile

  •20•1•0•0•Updated Apr 22, 2021Apr 22, 2021

• renku-r-template

  Public archive
  This is a bare R project template that can be directly imported in Renku.

  templaterrenku

  Dockerfile

  •1•0•0•0•Updated Sep 15, 2020Sep 15, 2020

• survival_analysis

  Public
  A R project for survival analysis based on the R "survival" package.

  R

  •

  Other

  •1•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• renku-r-tools

  Public
  A toolbox to work with R projects on Renku

  Python

  •

  Other

  •1•1•0•0•Updated Jun 10, 2020Jun 10, 2020

• MovementTracker_software

  Public
  MATLAB

  •0•0•0•0•Updated May 29, 2020May 29, 2020

• dada2_pipeline

  Public
  A template analysis for the dada2 pipeline

  R

  •

  MIT License

  •2•0•0•0•Updated Apr 3, 2020Apr 3, 2020

• renkulab-docker

  Public
  Jupyter images used by the Renku platform

  Dockerfile

  •

  Apache License 2.0

  •15•0•0•0•Updated Mar 30, 2020Mar 30, 2020

• slims-lisp-python-api

  Public
  A high-level CLI for Slims REST API

  Python

  •

  Other

  •1•0•0•0•Updated Mar 12, 2020Mar 12, 2020

• renku-tools

  Public archive
  A toolbox to work on renku

  Shell

  •0•0•0•0•Updated Oct 23, 2019Oct 23, 2019

• PheWAS

  Public
  Script used in the manuscript

  R

  •

  GNU General Public License v3.0

  •1•4•0•0•Updated May 13, 2019May 13, 2019