Repositories list

• Forkhead-mediated_regulation

  Public
  A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033

  systems-biologyregulationdata-analysis+ 3chipsaccharomyces-cerevisiaeforkhead

  Jupyter Notebook

  •0•0•0•0•Updated Sep 8, 2022Sep 8, 2022

• ChIP-exo_Fkh1_Fkh2

  Public
  ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | https://doi.org/10.1093/nar/gkz603

  systems-biologymetabolismcell-cycle+ 3chip-exoforkheadbinder

  HTML

  •0•1•0•0•Updated Mar 8, 2022Mar 8, 2022

• GEMMER

  Public
  GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 | http://doi.org/10.1093/bioinformatics/bty052 |

  visualizationtoolgenes+ 1saccharomyces-cerevisiae

  PHP

  •1•1•0•0•Updated Feb 27, 2022Feb 27, 2022

• Autonomous_minimal_cell_cycle_oscillator

  Public
  Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram Liebermeister and Matteo Barberis | NPJ Syst. Biol. Appl. (2020) | https://doi.org/10.1038/s41540-020-0125-0

  systems-biologyyeastcell-cycle+ 2oscillationslimit-cycles

  Jupyter Notebook

  •0•0•0•0•Updated Nov 14, 2020Nov 14, 2020