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    173 repositories

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•9•254•0•Updated Feb 5, 2025Feb 5, 2025

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •4•10•115•22•Updated Feb 5, 2025Feb 5, 2025

    • dotty

      Public
      cdot-based transcript projections
      Python
      •
      MIT License
      •0•0•2•0•Updated Feb 3, 2025Feb 3, 2025

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •5•5•39•1•Updated Feb 3, 2025Feb 3, 2025

    • ngs-chew

      Public
      Tasty, tasty, NGS!
      Python
      •1•3•14•2•Updated Feb 3, 2025Feb 3, 2025

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •2•1•8•0•Updated Feb 3, 2025Feb 3, 2025

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •4•9•39•6•Updated Feb 3, 2025Feb 3, 2025

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •284•0•0•1•Updated Jan 31, 2025Jan 31, 2025

    • LimsaR

      Public
      R client for SODAR
      R
      •
      Other
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •3•15•339•0•Updated Jan 29, 2025Jan 29, 2025

    • altamisa

      Public
      AltamISA: a Python API for ISA-Tab files
      bioinformaticsisa-tabisa
      Python
      •
      MIT License
      •2•5•23•7•Updated Jan 27, 2025Jan 27, 2025

    • kayobe

      Public
      Deployment of containerised OpenStack to bare metal using kolla and bifrost. Mirror of code maintained at opendev.org.
      Python
      •
      Apache License 2.0
      •34•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • kolla-ansible

      Public
      Ansible deployment of the Kolla containers. Mirror of code maintained at opendev.org.
      Jinja
      •
      Apache License 2.0
      •637•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • ood-bih-rstudio-server

      Public
      Open OnDemand App: RStudio Server
      Shell
      •
      MIT License
      •1•1•1•0•Updated Jan 23, 2025Jan 23, 2025

    • seasnap-pipeline

      Public
      SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
      Python
      •2•1•23•2•Updated Jan 22, 2025Jan 22, 2025

    • StemCNV-check

      Public
      R
      •
      MIT License
      •0•0•4•0•Updated Jan 16, 2025Jan 16, 2025

    • hpc-access

      Public
      Web interface for managing access and resource requests for the BIH cluster
      Python
      •
      MIT License
      •0•0•41•5•Updated Jan 15, 2025Jan 15, 2025

    • sodar-cli

      Public
      SODAR REST API client (CLI + Python package)
      Python
      •
      MIT License
      •1•1•7•4•Updated Jan 10, 2025Jan 10, 2025

    • Rseasnap

      Public
      Uncomplicated access to sea-snap objects from R
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•3•13•1•Updated Dec 19, 2024Dec 19, 2024

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •37•16•6•0•Updated Dec 13, 2024Dec 13, 2024

    • kiosc-server

      Public
      dockerdjango
      Python
      •
      MIT License
      •1•1•29•4•Updated Dec 9, 2024Dec 9, 2024

    • ansible-collection-kolla

      Public
      Ansible collection for OpenStack Kolla. Mirror of code maintained at opendev.org.
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•8•Updated Nov 22, 2024Nov 22, 2024

    • reev-docker-compose

      Public
      REEV Docker Compose
      Shell
      •
      MIT License
      •1•0•0•3•Updated Nov 22, 2024Nov 22, 2024

    • davrods-docker

      Public
      Davrods Docker image for use with SODAR
      Dockerfile
      •0•0•3•0•Updated Nov 18, 2024Nov 18, 2024

    • cubi-literature

      Public
      CUBI publications
      HTML
      •0•0•1•0•Updated Nov 7, 2024Nov 7, 2024

    • hpc-access-cli

      Public
      Python
      •
      MIT License
      •0•0•0•5•Updated Nov 4, 2024Nov 4, 2024

    • ood-bih-jupyter

      Public
      Open OnDemand App: Jupyter
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • howtotalk

      Public
      How to talk to your bioinformatician
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024