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    171 repositories

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •273•0•0•1•Updated Nov 16, 2024Nov 16, 2024

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•2•11•1•Updated Nov 15, 2024Nov 15, 2024

    • davrods-docker

      Public
      Davrods Docker image for use with SODAR
      Jinja
      •0•0•3•0•Updated Nov 15, 2024Nov 15, 2024

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •4•8•105•13•Updated Nov 15, 2024Nov 15, 2024

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •38•16•6•1•Updated Nov 14, 2024Nov 14, 2024

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •0•1•11•0•Updated Nov 13, 2024Nov 13, 2024

    • hpc-access

      Public
      Web interface for managing access and resource requests for the BIH cluster
      Python
      •
      MIT License
      •0•0•23•6•Updated Nov 13, 2024Nov 13, 2024

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•9•265•0•Updated Nov 12, 2024Nov 12, 2024

    • altamisa

      Public
      AltamISA: a Python API for ISA-Tab files
      bioinformaticsisa-tabisa
      Python
      •
      MIT License
      •2•5•23•7•Updated Nov 11, 2024Nov 11, 2024

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •2•9•39•4•Updated Nov 11, 2024Nov 11, 2024

    • cubi-literature

      Public
      CUBI publications
      HTML
      •0•0•1•0•Updated Nov 7, 2024Nov 7, 2024

    • kolla-ansible

      Public
      Ansible deployment of the Kolla containers. Mirror of code maintained at opendev.org.
      Jinja
      •
      Apache License 2.0
      •630•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • dotty

      Public
      cdot-based transcript projections
      Python
      •
      MIT License
      •0•0•2•0•Updated Nov 4, 2024Nov 4, 2024

    • hpc-access-cli

      Public
      Python
      •
      MIT License
      •0•0•0•5•Updated Nov 4, 2024Nov 4, 2024

    • ood-bih-jupyter

      Public
      Open OnDemand App: Jupyter
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • ood-bih-rstudio-server

      Public
      Open OnDemand App: RStudio Server
      Shell
      •
      MIT License
      •1•1•1•0•Updated Nov 1, 2024Nov 1, 2024

    • StemCNV-check

      Public
      R
      •
      MIT License
      •0•0•3•0•Updated Nov 1, 2024Nov 1, 2024

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •3•14•341•0•Updated Oct 31, 2024Oct 31, 2024

    • kayobe

      Public
      Deployment of containerised OpenStack to bare metal using kolla and bifrost. Mirror of code maintained at opendev.org.
      Python
      •
      Apache License 2.0
      •33•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • kiosc-server

      Public
      dockerdjango
      Python
      •
      MIT License
      •1•1•29•4•Updated Oct 28, 2024Oct 28, 2024

    • ngs-chew

      Public
      Tasty, tasty, NGS!
      Python
      •1•3•14•2•Updated Oct 28, 2024Oct 28, 2024

    • howtotalk

      Public
      How to talk to your bioinformatician
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•7•Updated Oct 2, 2024Oct 2, 2024

    • auto-acmg

      Public
      Automatic classification of sequence variants and CNVs according to ACMG criteria.
      algorithmvariant-analysisacmg-guidelines
      Python
      •
      GNU General Public License v3.0
      •0•8•6•0•Updated Sep 30, 2024Sep 30, 2024

    • reev-docker-compose

      Public
      REEV Docker Compose
      Shell
      •
      MIT License
      •1•0•0•3•Updated Sep 25, 2024Sep 25, 2024

    • RCrashCourse2023

      Public
      HTML
      •1•3•0•0•Updated Sep 22, 2024Sep 22, 2024

    • sodar-django-site

      Public
      Django site template for SODAR Core based projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 9, 2024Sep 9, 2024

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •6•4•37•5•Updated Sep 6, 2024Sep 6, 2024

    • netbox-docker

      Public
      🐳 Docker Image of NetBox
      Shell
      •
      Apache License 2.0
      •865•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • hpc-access-docker-compose

      Public
      Docker compose for hpc-access
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024