Repositories list

• JPhyloIO

  Public
  A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

  metadatalibrarybioinformatics+ 8phylogeneticsiobioinformatics-datanewickphylogenetic-datanexmlphyloxml+ 1

  Java

  •

  Other

  •0•1•0•1•Updated Jul 12, 2025Jul 12, 2025

• commons.java

  Public
  bioinfweb.commons.java - Shared components of bioinfweb projects made available in a Java library

  librarybioinformaticsswing+ 3servletswtcommon-library

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•1•Updated Jul 12, 2025Jul 12, 2025

• TopologicalTreeAnalyzer

  Public
  Topological Tree Analyzer

  Java

  •0•0•0•0•Updated May 4, 2021May 4, 2021

• TreeGraph2

  Public
  A feature rich and easy to use phylogenetic tree editor

  editormetadatabioinformatics+ 6nexusphylogeneticsnewick-formatphylogenetic-treenexmlphyloxml

  Java

  •

  GNU General Public License v3.0

  •1•11•0•0•Updated Apr 26, 2021Apr 26, 2021

• PhyDE2

  Public
  An alignment editor for phylogenetic purposes

  editorbioinformaticsmultiple-sequence-alignment

  Java

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Feb 5, 2021Feb 5, 2021

• LibrAlign

  Public
  A Java GUI library for displaying and editing multiple sequence alignments and attached raw- and metadata

  metadataguilibrary+ 6bioinformaticsswingswtsanger-chromatogramsgui-componentsmultiple-sequence-alignment

  Java

  •

  Other

  •1•0•0•1•Updated Feb 4, 2021Feb 4, 2021

• JTreeSS

  Public
  Reading and interpreting TreeSS styles for phylogenetic trees in Java

  librarybioinformaticsphylogenetic-trees+ 2style-sheettreess

  Java

  •0•0•0•0•Updated Sep 20, 2019Sep 20, 2019

• TreeSS

  Public
  Language defintions for TreeSS used by JTreeSS

  0•0•0•0•Updated Sep 20, 2019Sep 20, 2019

• AlignmentComparator

  Public
  Visualizing differences between alternative multiple sequence alignments of the same dataset

  bioinformaticscomparisonmultiple-sequence-alignment

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 1, 2019Feb 1, 2019

• TIC

  Public
  Toolkit Independent Components (TIC) - A Java library for creating toolkit-independent GUI components compatible with Swing and SWT

  guilibraryswing+ 1swt

  Java

  •

  Other

  •0•0•0•0•Updated Jul 22, 2018Jul 22, 2018