Repositories list

• bil_site

  Public
  The submission portal for the Brain Image Library

  Python

  •

  GNU General Public License v3.0

  •1•1•25•6•Updated Jul 28, 2025Jul 28, 2025

• py-inventory-builder

  Public
  Inventory script that generates a JSON file with file level stats. Replaces manifest scripts.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• ondemand-codeserver

  Public
  Codeserver Configuration

  ondemand

  GNU General Public License v3.0

  •0•0•0•0•Updated May 21, 2025May 21, 2025

• ondemand-desktop

  Public
  OOD Interactive Desktop YAML file

  0•0•0•0•Updated May 21, 2025May 21, 2025

• bil_info_site

  Public
  HTML

  •4•0•0•0•Updated May 7, 2025May 7, 2025

• py-brain-sdk

  Public
  A Python package designed for seamless integration with the Brain Image Library APIs, facilitating efficient retrieval and manipulation of valuable neuroscience data.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

• py-brain-inventory

  Public
  Python package that can get data from BIL inventories

  data-vizdata-analysisbrain-image-library

  Python

  •

  GNU General Public License v3.0

  •0•1•23•3•Updated Jan 20, 2025Jan 20, 2025

• workshops

  Public
  Jupyter Notebook

  •1•3•0•0•Updated Dec 5, 2024Dec 5, 2024

• py-brain-sdk-documentation

  Public
  The docs

  Python

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• python-modulefiles

  Public
  LMOD modulefilesf for different Python/R package managers

  Lua

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• singularity-jxl-tools

  Public
  JPEG XL image format reference implementation.

  0•0•0•0•Updated May 1, 2024May 1, 2024

• singularity-eog

  Public
  Eye of GNOME provides basic effects for improved viewing, such as zooming, full-screen, rotation, and transparent image background control.

  visualizationsingularityviz

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• singularity-gnuplot

  Public
  gnuplot is a command-line program that can generate two- and three-dimensional plots of functions, data, and data fits.

  visualizationsingularityviz

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• singularity-gimp

  Public
  GIMP is a cross-platform image editor available for GNU/Linux, macOS, Windows and more operating systems. It is free software, you can change its source code and distribute your changes.

  Lua

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• napari-bil-data-viewer

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•6•0•0•Updated Feb 28, 2024Feb 28, 2024

• flask-inventory-api

  Public
  Brain Image Library Inventory API

  Python

  •0•0•0•0•Updated Aug 24, 2023Aug 24, 2023

• py-brain-inventory-gource

  Public
  Create Gource video from py-brain-inventory

  gource-visualizationsamsprecollege

  Shell

  •

  GNU General Public License v3.0

  •0•0•3•3•Updated Aug 3, 2023Aug 3, 2023

• py-brain-logs

  Public
  Just scripts to manage web logs

  Jupyter Notebook

  •0•0•6•4•Updated Jul 19, 2023Jul 19, 2023

• py-brain-logs-gource

  Public
  0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• brain-lib-org-redirect

  Public
  HTML

  •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

• GetYourBrainPipelined

  Public
  Example scripts for setting up a brain processing pipeline

  Python

  •2•0•0•0•Updated Mar 10, 2022Mar 10, 2022

• container-bioformats2raw

  Public
  Containerization of bioformats2raw

  0•0•0•0•Updated Mar 9, 2022Mar 9, 2022

• public-facing-documentation

  Public
  Python

  •0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

• simple-slack

  Public
  Helper script to communicate with team members on Slack

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 17, 2021Aug 17, 2021

• bil_site_v2

  Public
  Version 2 of bil_site

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019