Repositories list

• encode

  Public
  Method for encoding brain connectomes in multidimensional arrays (tensors).

  diffusion-mritractographylife+ 7matlabmultidimensional-arraysbrainmbabrain-connectomesencoding-connectomeswhite-matter-connectomes

  MATLAB

  •25•38•4•1•Updated Apr 2, 2021Apr 2, 2021

• mrTools

  Public
  mrTools - matlab based tools for fMRI

  MATLAB

  •

  Other

  •28•0•0•0•Updated Aug 7, 2020Aug 7, 2020

• mba

  Public
  Matlab Brain Anatomy. This is a set of routines for displaying and manipulating brain anatomy using MatLab.

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •12•0•0•0•Updated May 21, 2019May 21, 2019

• vistasoft

  Public
  DEPRECATED: brain-life no longer uses this - we use vistalab/vistasoft

  MATLAB

  •142•0•0•3•Updated Dec 10, 2018Dec 10, 2018

• o3d-code

  Public
  Open Derivatives Diffusion Data scripts used to generate and organize the data

  Python

  •0•1•7•0•Updated Nov 22, 2018Nov 22, 2018

• app-dp-profile

  Public
  MATLAB

  •

  MIT License

  •0•1•0•0•Updated Sep 12, 2018Sep 12, 2018

• app-dp-modelfit

  Public
  Shell

  •0•0•0•0•Updated Aug 24, 2018Aug 24, 2018

• app-dp-removetract

  Public
  MATLAB

  •0•0•0•0•Updated Aug 21, 2018Aug 21, 2018

• dp

  Public archive
  dp test

  MATLAB

  •0•0•0•0•Updated Aug 2, 2018Aug 2, 2018

• app-AFQ_no-life

  Public archive
  (deprecated by brain-life/app-tractclassification)

  analysis

  MATLAB

  •1•0•0•0•Updated Jun 1, 2018Jun 1, 2018

• wma_verttracks

  Public
  MATLAB

  •0•0•0•0•Updated May 30, 2018May 30, 2018

• workflow_ui

  Public
  Workflow UI prototype for Brain-Life

  JavaScript

  •1•0•5•0•Updated Feb 8, 2018Feb 8, 2018

• app-DorsalAttentionNetwork

  Public archive
  Index specific connections for a project

  MATLAB

  •1•0•1•0•Updated Jan 17, 2018Jan 17, 2018

• pestillilab_projects

  Public
  This repository contains code beign developed for a majority of the projects being undertaken by the Pestilli Research Group.

  MATLAB

  •

  GNU General Public License v2.0

  •7•0•2•2•Updated Sep 2, 2017Sep 2, 2017

• app-recobundles

  Public archive
  This application takes in a full tractography (Multishell Tractography w/CSA or Multishell Tractography w/ SHORE) and the output from the White Matter Segmentation and uses the Recobundles algorithm to find the corresponding white matter segmentation in the full tractogram.

  analysis

  Shell

  •0•1•0•0•Updated Aug 9, 2017Aug 9, 2017

• brainpy

  Public
  Python Tools for Brain Analysis

  Python

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Jun 19, 2017Jun 19, 2017

• dipy

  Public
  Diffusion MR Imaging in Python

  Python

  •

  Other

  •438•0•0•0•Updated Jun 16, 2017Jun 16, 2017

• chiasm

  Public
  MATLAB

  •1•0•0•1•Updated Jun 2, 2017Jun 2, 2017

• life-1

  Public
  MatLab routines for evaluating the quality of white-matter connectomes generated using diffusion-weighted imaging.

  C

  •15•1•0•0•Updated May 9, 2017May 9, 2017

• ensemble_tractography

  Public
  Track brain connections combining multiple tracking methods and parameters.

  Shell

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 28, 2017Apr 28, 2017

• lifebid2sda

  Public
  Repository to keep track of lifebid projects on DC2 using the archive/restore method

  0•0•0•0•Updated Apr 18, 2017Apr 18, 2017

• WMmorphology

  Public
  code for white matter morphology project

  Python

  •1•0•0•0•Updated Apr 14, 2017Apr 14, 2017

• o3d

  Public
  Open Derivatives Diffusion Data

  0•0•1•0•Updated Nov 2, 2016Nov 2, 2016

• hyperbrain

  Public
  Python

  •1•0•0•0•Updated Sep 8, 2016Sep 8, 2016

• glue

  Public
  Scripts for AD projects.

  0•0•0•0•Updated Sep 2, 2016Sep 2, 2016

• wmp

  Public
  White matter plasticity

  MATLAB

  •2•0•0•0•Updated Apr 25, 2016Apr 25, 2016