Connectomics Lab

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15 repositories

clabtoolkit
Public
This repository contains a python package that includes useful tools for image processing.
Python
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Other
•1•0•0•0•Updated Nov 8, 2024Nov 8, 2024
chimera
Public
Python
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Other
•0•4•0•0•Updated Nov 6, 2024Nov 6, 2024
indivbrainparcel
Public
Python package to parcellate the human brain using the Lausanne multi-scale cortical atlas and the thalamic nuclei atlas developed in the Connectomics and MIAL labs respectively
Python
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Other
•1•0•0•0•Updated Aug 19, 2024Aug 19, 2024
connectomemapper3
Public
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
docker pipelines singularity eeg fmri bids brain connectome parcellation dmri
HTML
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Other
•29•71•18•2•Updated Aug 15, 2024Aug 15, 2024
hcp-behavioral-domains
Public
This is the repository to store the analysis code for the paper "Exploring the Latent Structure of Behavior Using the Human Connectome Project’s Data".
Jupyter Notebook
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MIT License
•2•3•0•1•Updated Jul 11, 2023Jul 11, 2023
Glioma_Change_Detection_T2w
Public
Python
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Apache License 2.0
•1•0•0•0•Updated Feb 14, 2023Feb 14, 2023
Aneurysm_Detection
Public
This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and anatomical knowledge "
detection segmentation weakly-supervised-detection aneurysm tof-mra anatomical-knowledge deep-learning
Python
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Apache License 2.0
•9•29•2•0•Updated Feb 14, 2023Feb 14, 2023
probconnatlas
Public
Python
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Apache License 2.0
•2•9•0•0•Updated Jan 23, 2023Jan 23, 2023
connectome_spectral_analysis
Public
Repository for paper https://authors.elsevier.com/sd/article/S1053-8119(21)00884-3
Jupyter Notebook
•4•1•0•0•Updated Sep 24, 2021Sep 24, 2021
Glioma_NLP
Public
This repository contains the code used for the paper:"Diagnostic surveillance of high-grade gliomas: towards automated change detection using radiology report classification"
Python
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Apache License 2.0
•1•0•0•0•Updated Aug 19, 2021Aug 19, 2021
ds-sample-test2
Public
0•0•0•0•Updated Jul 16, 2021Jul 16, 2021
ds-sample-test1
Public
0•0•0•0•Updated Jul 15, 2021Jul 15, 2021
CMTKLIB-data
Public
Datalad dataset that stores all data resources of the cmtklib module of Connectome Mapper 3 (https://github.com/connectomicslab/connectomemapper3).
data resources software brain parcellation
Python
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Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Mar 10, 2021Mar 10, 2021
cmp3-ohbm2020
Public
Repo dedicated to resources for presenting connectome mapper 3 at OHBM 2020 Virtual Meeting
HTML
•1•0•0•0•Updated Jun 15, 2020Jun 15, 2020
hcp2bids
Public
To convert Human Connectome projects(HCP) data to BIDS std
Python
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MIT License
•22•1•0•0•Updated Mar 21, 2019Mar 21, 2019