Fred Hutch Data Science Lab

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140 repositories

ITN_course_search
Public
A searchable table for ITN courses
R
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MIT License
•0•0•0•1•Updated Apr 18, 2025Apr 18, 2025
bioconductor_genomics
Public
JavaScript
•1•0•0•0•Updated Apr 18, 2025Apr 18, 2025
DaSEH
Public
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
data-science course tidyverse public-health beginner beginner-friendly r-programming niehs environmental-health beginner-programming
HTML
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MIT License
•1•0•20•3•Updated Apr 17, 2025Apr 17, 2025
intro_to_sql
Public
Intro to SQL Course for Fred Hutch Winter 2025
HTML
•2•5•0•0•Updated Apr 17, 2025Apr 17, 2025
AI_for_Decision_Makers
Public
This set of four mini courses helps leaders make strategic decisions, drive innovation, enhance efficiency, and foster a culture that embraces the transformative power of these technologies.
course ai policy regulations hutch-course itn-course audience-leaders category-fundamentals-tools-resources using-ai ai-tasks
TeX
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Creative Commons Attribution 4.0 International
•1•1•22•7•Updated Apr 17, 2025Apr 17, 2025
AnVIL_Demos
Public
⏱ 30-minute demos and tutorials from our live AnVIL series
cloud course research module genomics cloud-computing anvil
CSS
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Creative Commons Attribution 4.0 International
•1•0•0•2•Updated Apr 15, 2025Apr 15, 2025
AnVIL_Collection
Public
📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
website anvil content-library gdscn edtech-software
R
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Creative Commons Attribution 4.0 International
•1•0•0•1•Updated Apr 15, 2025Apr 15, 2025
Choosing_Genomics_Tools
Public
Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.
data-processing genomic-data data-interpretation itn-course audience-researchers category-fundamentals-tools-resources resources-and-tools launched-aug2023
TeX
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Creative Commons Attribution 4.0 International
•6•9•28•2•Updated Apr 14, 2025Apr 14, 2025
UMich_ITN_Workshop
Public
An OTTR website for resources and activities for the ITN workshops at UMich 2025
itn-workshop
CSS
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MIT License
•0•0•0•0•Updated Apr 14, 2025Apr 14, 2025
AnVIL_Poll_2024
Public
A summary of our findings from the 2024 State of the AnVIL user poll.
website anvil 2024 state-of-the-anvil user-poll
HTML
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MIT License
•0•0•4•3•Updated Apr 4, 2025Apr 4, 2025
Tools_for_Reproducible_Workflows_in_R
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•13•0•Updated Apr 2, 2025Apr 2, 2025
Containers_for_Scientists
Public
This course covers how to use containers for scientific software development. Scientific software benefits from the concepts of continuous integration (CI) and continuous deployment (CD). Containers play a critical role in CI/CD by providing a consistent, portable, and isolated environment for building, testing, and deploying software.
docker containers ci-cd software itn-course audience-software-developers category-software-dev launched-nov2024
CSS
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Creative Commons Attribution 4.0 International
•1•1•1•0•Updated Apr 2, 2025Apr 2, 2025
metricminer-dashboard
Public archive
A template dashboard that helps you display your metricmined data in no time!
R
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MIT License
•0•1•9•0•Updated Apr 1, 2025Apr 1, 2025
metricminer.org
Public archive
A website for metricminer
HTML
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MIT License
•0•0•0•0•Updated Apr 1, 2025Apr 1, 2025
metricminer
Public archive
R package that digs up data that matters from APIs, making it dashboard-ready
edtech-software
R
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MIT License
•0•2•34•1•Updated Apr 1, 2025Apr 1, 2025
OTTR_Jekyll
Public archive
CSS
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MIT License
•0•0•0•0•Updated Apr 1, 2025Apr 1, 2025
OTTR_Quarto
Public archive
Repo for Quarto based Open-source Tools for Training Resources (OTTR)
quarto quarto-template
CSS
•1•2•7•1•Updated Apr 1, 2025Apr 1, 2025
OTTR_Quarto_Website
Public archive
OTTR template for making a Quarto based website
CSS
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MIT License
•0•0•1•0•Updated Apr 1, 2025Apr 1, 2025
capstone-sandbox
Public template
Dockerfile
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MIT License
•0•0•0•0•Updated Apr 1, 2025Apr 1, 2025
Intermediate_Python
Public
JavaScript
•0•0•0•0•Updated Apr 1, 2025Apr 1, 2025
Ethical_Data_Handling_for_Cancer_Research
Public
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
security privacy risk hipaa data-sharing ethics de-identification itn-course audience-leaders audience-researchers
TeX
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Creative Commons Attribution 4.0 International
•0•1•13•0•Updated Apr 1, 2025Apr 1, 2025
GDSCN_SARS_RStudio_on_AnVIL
Public
Lab module and lectures for identifying phylogenetic history of SARS variants using R
course module anvil phylogenetic-analysis sars-cov-2 gdscn
CSS
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Creative Commons Attribution 4.0 International
•0•0•3•0•Updated Apr 1, 2025Apr 1, 2025
test_bench_to_bytes
Public
Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Apr 1, 2025Apr 1, 2025
AnVIL_Book_Epigenetics_Intro
Public
An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.
module epigenetics anvil ucsc-browser human-genomes course
CSS
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Creative Commons Attribution 4.0 International
•3•0•0•0•Updated Apr 1, 2025Apr 1, 2025
fhdsl_Training_Kit
Public
This resource is intended to provide guidance and assistance for creating online and in-person training materials.
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Apr 1, 2025Apr 1, 2025
DataViz_Considerations
Public
ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•2•Updated Apr 1, 2025Apr 1, 2025
Robust_Software_Development
Public
ITN course on robust software development and giving your code base a full set of features beyond the code itself
CSS
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Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Apr 1, 2025Apr 1, 2025
NIH_Data_Sharing
Public
Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
data-storage policy budgeting data-management data-sharing nih grant-proposals grant-submission hutch-course itn-course
CSS
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Creative Commons Attribution 4.0 International
•0•0•6•0•Updated Apr 1, 2025Apr 1, 2025
reproducibility_capstone
Public
CSS
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Creative Commons Attribution 4.0 International
•0•0•5•0•Updated Apr 1, 2025Apr 1, 2025
GEMs
Public
Homepage for the Genomics Education Modules (GEMs) Program at Fred Hutch
education bioinformatics genomics entry-level entry-level-bioinformatics
CSS
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MIT License
•0•0•5•0•Updated Apr 1, 2025Apr 1, 2025