Repositories list

• globi-server-scripts

  Public
  bash scripts used for GloBI server

  Shell

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• elton

  Public
  Access, review and index existing species interaction datasets

  HTML

  •

  GNU General Public License v3.0

  •2•3•17•0•Updated Sep 30, 2024Sep 30, 2024

• globalbioticinteractions

  Public
  Global Biotic Interactions provides access to existing species interaction datasets

  bioinformaticsparasitesbiology+ 11dietecologybiodiversitydiseasesetl-frameworkfood-websecoinformatics+ 4

  Java

  •

  GNU General Public License v3.0

  •17•124•341•0•Updated Sep 30, 2024Sep 30, 2024

• climbats

  Public
  GloBI index configuration for ClimBats: Froidevaux, J.S.P., Toshkova, N., Barbaro, L. et al., 2023. A species-level trait dataset of bats in Europe and beyond. Science Data 10, 253. https://doi.org/10.1038/s41597-023-02157-4

  0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• darkcides

  Public
  Configuration for GloBI to index Tanalgo, Krizler; Tabora, John Aries G.; Oliveira, Hernani Fernandes Magalhães; Haelewaters, Danny; Beranek, Chad T.; Otálora-Ardila, Aída; et al. (2021). Metadata for: DarkCideS 1.0, a global database for bats in karsts and caves. figshare. Dataset. https://doi.org/10.6084/m9.figshare.16413405.v4

  0•0•1•0•Updated Sep 16, 2024Sep 16, 2024

• globalbioticinteractions.github.io

  Public
  source files for GloBI website

  HTML

  •

  MIT License

  •14•8•7•9•Updated Sep 15, 2024Sep 15, 2024

• cmnh-izc

  Public
  0•0•1•0•Updated Sep 5, 2024Sep 5, 2024

• virus-host-db

  Public
  Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016).

  0•1•1•0•Updated Aug 20, 2024Aug 20, 2024

• wardeh2015

  Public
  0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• brose

  Public
  Dataset extracted from Brose 2005

  0•0•1•0•Updated Aug 10, 2024Aug 10, 2024

• globinizer

  Public
  Checks whether datasets are ready for GloBI indexing

  Shell

  •

  MIT License

  •1•1•0•0•Updated Aug 7, 2024Aug 7, 2024

• taxon-graph-builder

  Public
  Builder for Global Biotic Interactions Taxon Graph

  Makefile

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  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• mycoportal

  Public
  configuration for indexing MyCoPortal via Symbiota RSS feed

  0•0•2•0•Updated Jul 19, 2024Jul 19, 2024

• vertnet

  Public
  GloBI-enabled configuration for VertNet.org

  0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• zenodo-metadata

  Public
  This repository contains configuration for GloBI to help index Zenodo publications with species interaction annotations.

  0•0•1•0•Updated Jul 18, 2024Jul 18, 2024

• vectorbase

  Public
  0•0•2•0•Updated Jul 18, 2024Jul 18, 2024

• Catalogue-of-Afrotropical-Bees

  Public
  from http://doi.org/10.15468/u9ezbh : "The purpose of this catalogue is to list the valid names, nomenclatorial history of, and references citing, the described bees of sub-saharan Africa and the western Indian Ocean islands, excluding the honey bee (Apis mellifera Linnaeus). The countries in which species occur are listed, as well as the type s…

  0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• yale-peabody

  Public
  GloBI configuration for indexing collections of Yale University Peabody Museum

  1•0•1•0•Updated Jul 18, 2024Jul 18, 2024

• NeoBat_Interactions

  Public
  Repository of the NeoBat Interactions data paper

  R

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Jul 13, 2024Jul 13, 2024

• nomer

  Public
  maps identifiers and names to other identifiers and names

  HTML

  •

  GNU General Public License v3.0

  •3•18•61•0•Updated Jul 12, 2024Jul 12, 2024

• name-alignment-template

  Public template
  align names with known taxonomic resources

  Creative Commons Zero v1.0 Universal

  •6•2•5•0•Updated Jul 12, 2024Jul 12, 2024

• bat-co-roosting-database

  Public
  GloBI configuration for indexing: Aja Sherman and Cullen Geisenman. 2021. Bat Co-Roosting Database

  R

  •2•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• globi-taxon-graph-patches

  Public
  This repository contains patch procedures and patch files to document changes across versions of GloBI's Taxon Graph (see https://doi.org/10.5281/zenodo.755513).

  Shell

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• cmnz

  Public
  Configuration to help index species interactions records associated with records of the Canterbury Museum, Christchurch, New Zealand.

  0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• kf-metaweb

  Public
  GloBI configuration to help index: Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845

  0•0•0•0•Updated Jun 5, 2024Jun 5, 2024

• AMNH-hymenoptera

  Public
  0•0•0•0•Updated May 20, 2024May 20, 2024

• taxonworks

  Public
  Configuration to help Global Biotic Interactions index Biological Associations in TaxonWorks

  0•0•0•0•Updated May 8, 2024May 8, 2024

• unhc-unhc

  Public
  0•0•1•0•Updated May 3, 2024May 3, 2024

• virjendb

  Public
  VirJenDB: a central hub connecting virus researchers to publicly available virus resources, metadata and sequences. 2024. https://virjendb.org/Downloads

  0•0•3•0•Updated Mar 26, 2024Mar 26, 2024

• zmo-gyrodactylus

  Public
  Bachmann L (2021). Artsprosjektet - Gyrodactylus. Version 1.10. University of Oslo.

  0•0•0•0•Updated Mar 22, 2024Mar 22, 2024