Skip to content

@hackbio-ca Toronto Bioinformatics Hackathon

Change the repository type filter

All

    Repositories list

    15 repositories

    • website

      Public
      Toronto Bioinformatics Hackathon Website
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • diffusion-deconvolution-dia-msms

      Public
      🚀 Winner of the Donnelly Centre Innovation and Commercialization award: Apply diffusion models to deconvolute highly multiplexed DIA-MS/MS data by conditioning on MS1 signals to generate cleaner MS2 data for downstream analysis.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • disease-susceptibility-analysis

      Public
      🏆 Winner of the Perseverance award: Create a tool capable of predicting susceptibility to disease in remote or otherwise underserved areas.
      HTML
      •2•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • cite-seq-foundation-model-evaluation

      Public
      🥈 Winner of the Runner Up award: Evaluating foundation models for predicting surface protein abundance from RNA expression.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • rna-expression-from-sequence

      Public
      🥇 Winner of the First Place award: Design a model to predict protein binding affinity to specific DNA sequences using known transcription factors and their binding sites.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • .github

      Public
      Toronto Bioinformatics Hackathon GitHub README
      0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • phix-molecular-docking

      Public
      A pH-Adaptive Protein-Ligand Simulation Tool to Enhance Molecular Docking Accuracy
      Python
      •
      MIT License
      •2•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • ai-cancer-cell-labelling

      Public
      Use deep learning models to automate the identification and labelling of cancer cells in microscopy images, improving diagnostic efficiency and reducing human error.
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • functional-annotation-genomic-proteomic-data

      Public
      A tool for comprehensive functional annotation of genes and proteins using sequence similarity, domain identification, and pathway mapping.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • rna-evolution-simulation

      Public
      Construct a simulation of self-replicating RNA polymers to model their evolution over time and explore the emergence of new functions through selection and mutation processes.
      MIT License
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • predicting-disease-causing-mutations

      Public
      Creating a better understanding of how specific mutations can affect protein function and structure.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • ppi-prediction-from-rna-seq

      Public
      Construct a model to predict protein-protein interactions using RNA-seq data by identifying co-expressed gene groups and integrating with proteomics data.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 29, 2024Sep 29, 2024

    • splice-site-strength-quantification

      Public
      Develop a method to quantify splice site strength across vertebrate species using computational models to analyze splice site sequences and predict splicing outcomes.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • GIBSON

      Public
      Mining RNAcentral to identify the relationship between Gibbs free energy of RNA-RNA interactions
      Jupyter Notebook
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • network-motif-simulator

      Public
      Develop a tool to simulate and visualize dynamic properties of biological network motifs, enabling researchers to explore the impact of different topologies on cellular processes.
      MIT License
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024