Repositories list

• circtools

  Public
  circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

  Python

  •

  GNU General Public License v3.0

  •21•0•2•0•Updated Jan 25, 2025Jan 25, 2025

• pblat

  Public
  parallelized blat with multi-threads support

  C

  •

  Other

  •15•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• long_read_circRNA

  Public
  CircRNA detection in nanopore data

  Python

  •

  MIT License

  •4•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• bioinfo-scripts

  Public
  Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

  bioinformaticsslurmrna+ 4circularbioinformatics-scriptscircrnasslurm-workload-manager

  Shell

  •

  Other

  •1•1•0•0•Updated May 29, 2024May 29, 2024

• .github

  Public
  Public Jakobi lab repository

  0•0•0•0•Updated May 1, 2024May 1, 2024

• circhemy

  Public
  Convert and query IDs of circular RNAs from many different databases

  converterconversionrna+ 4circularcircrnanaming-patterncircularrna

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 26, 2024Apr 26, 2024

• cts505

  Public
  Repository holding code and other documents for the CTS 505 course "Introduction to bioinformatics" at the University of Arizona, College of Medicine Phoenix.

  bashdata-sciencebioinformatics+ 4rrnaseqcts505clinical-translational-graduate-program

  TeX

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

• slurm-tools

  Public
  Tools for daily work with the SLURM scheduler

  hpcslurm

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• jakobilab-web

  Public
  👥 Create a stunning Research Group Website with Wowchemy and Hugo

  TeX

  •

  MIT License

  •365•0•0•0•Updated Sep 1, 2023Sep 1, 2023

• wowchemy-hugo-modules

  Public
  🔥 The website builder for Hugo. No code, build with widgets! 创建在线课程，学术简历或初创网站。

  HTML

  •

  MIT License

  •2.9k•0•0•11•Updated Mar 7, 2023Mar 7, 2023

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Aug 27, 2022Aug 27, 2022

• glembotskilab-web

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

• playground

  Public
  0•0•0•0•Updated Jul 29, 2022Jul 29, 2022

• saruman

  Public
  SARUMAN: Using GPU programming for short read mapping

  mappinggpuread+ 2sequencingexact

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 16, 2019Aug 16, 2019