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    28 repositories

    • EMDB_helical_parameter_curation

      Public
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • relion

      Public
      Image-processing software for cryo-electron microscopy
      C++
      •
      GNU General Public License v2.0
      •205•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • procart

      Public
      A Web app that plots a cartoon to illustrate the residue properties of amyloid proteins in the context of their atomic structures
      structural-biologyneurodegenerative-diseases
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • HelicalProjection

      Public
      Web app for the comparision of 2D images with helical structure projections
      structural-biologycryo-emhelical-indexing
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 11, 2025Jan 11, 2025

    • helicon

      Public
      Tools for cryo-EM analysis of helical structures
      structural-biologyimage-processingcryo-emhelical-indexing
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • HILL

      Public
      Helical Indexing using Layer Lines
      structural-biologycryo-emhelical-indexing
      Python
      •
      MIT License
      •2•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • HelicalPitch

      Public
      Web app for the determination of helical pitch/twist using 2D classification info
      structural-biologycryo-emhelical-indexing
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • HI3D

      Public
      Helical indexing using the cylindrical projection of a 3D density map
      structural-biologycryo-emhelical-indexing
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 21, 2024Nov 21, 2024

    • ctfsimulation

      Public
      A CTF Simulation Web App
      structural-biologyelectron-microscopycryo-em
      Python
      •
      MIT License
      •2•11•1•0•Updated Nov 16, 2024Nov 16, 2024

    • map2seq

      Public
      Identify the best protein sequence that explains a 3D density map
      structural-biologycryo-em
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • HelicalLattice

      Public
      A Web App that helps the user to understand how a helical lattice and its underlying 2D lattice can interconvert
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • HelicalLattice_shiny

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

    • maskChains

      Public
      Mask density map based on closest chains
      structural-biologycryo-em
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • cryodrgn

      Public
      Neural networks for cryo-EM reconstruction
      Python
      •
      GNU General Public License v3.0
      •80•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • ColabFold

      Public
      Making Protein folding accessible to all via Google Colab!
      Jupyter Notebook
      •
      MIT License
      •516•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • aitom

      Public
      AI for tomography
      Python
      •
      GNU General Public License v3.0
      •76•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated May 15, 2024May 15, 2024

    • eman2

      Public
      A scientific image processing software suite with a focus on CryoEM and CryoET
      Python
      •49•0•0•0•Updated May 15, 2024May 15, 2024

    • HelicalPitch_streamlit

      Public archive
      determine helical pitch/twist using 2D Classification info
      Python
      •
      MIT License
      •0•0•0•0•Updated May 8, 2024May 8, 2024

    • helicon_web

      Public
      3D reconstruction of helical structures
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

    • protein-ligand-binding

      Public
      A Web app that plots the fraction of protein molecules in ligand-bound states as a function of protein concentration, ligand concentration, and binding affinity.
      sciencewebappdrug-discoverybiophysicsstreamlit
      Python
      •
      MIT License
      •1•2•0•0•Updated Jan 21, 2024Jan 21, 2024

    • cryofire

      Public
      Amortized inference for ab initio heterogeneous cryo-EM reconstruction
      Python
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • tomography

      Public archive
      software for alignment and 3-D reconstruction of electron tomography tilt series
      Python
      •
      GNU General Public License v2.0
      •2•6•0•0•Updated Oct 22, 2020Oct 22, 2020

    • DigitalMicrographScripts

      Public archive
      Scripts for Digital Micrograph software by Gatan
      Assembly
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Oct 22, 2020Oct 22, 2020

    • ctfsimu-java

      Public archive
      Java-applet based CTF simulation
      HTML
      •0•2•0•0•Updated Oct 15, 2020Oct 15, 2020

    • Online-Neural-Network

      Public archive
      Database management system and neural network for cryoEM particle data.
      Python
      •1•0•0•0•Updated Sep 6, 2020Sep 6, 2020

    • motioncorr

      Public archive
      motion correction for movies recorded using direct electron detectors
      C++
      •8•14•1•0•Updated Apr 30, 2017Apr 30, 2017

    • HybridNanoParticles

      Public archive
      Single-Particle Cryo-EM and 3D Reconstruction of Hybrid Nanoparticles with Electron-Dense Components
      Python
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Dec 9, 2015Dec 9, 2015