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    26 repositories

    • microbiome_benga_hostgenotype

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • rust-debruijn

      Public
      De Bruijn graphs in Rust
      Rust
      •
      MIT License
      •17•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • teaching_MS-MO-ABS

      Public
      MS-MO-ABS teaching material
      Jupyter Notebook
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • algorithm_vxdetector

      Public
      predict variable region from amplicon sequences
      Python
      •1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • marbel

      Public
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Sep 23, 2024Sep 23, 2024

    • qiita-keycloak

      Public
      containerized keycloak configuration
      Shell
      •0•0•1•2•Updated Aug 20, 2024Aug 20, 2024

    • fold-grammars

      Public
      Collection of bgap code for RNA folding
      Perl
      •
      GNU General Public License v3.0
      •5•3•4•7•Updated Aug 12, 2024Aug 12, 2024

    • gapc

      Public
      Bellman's GAP compiler
      C++
      •
      GNU General Public License v3.0
      •6•7•18•10•Updated Aug 11, 2024Aug 11, 2024

    • bellmanscafe

      Public
      Interactive GAPc Website
      Python
      •2•0•12•2•Updated Jul 11, 2024Jul 11, 2024

    • qiita

      Public
      Qiita - A multi-omics databasing effort
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •80•0•0•2•Updated Jun 21, 2024Jun 21, 2024

    • ADP_collection

      Public
      Collection of various ADP problem implementation
      GAP
      •0•0•0•3•Updated May 29, 2024May 29, 2024

    • sepp

      Public
      Ensemble of HMM methods (SEPP, TIPP, UPP)
      Python
      •
      GNU General Public License v3.0
      •38•0•0•3•Updated May 16, 2024May 16, 2024

    • qiita-files

      Public
      File formats defined for Qiita and Qiita plugins internal use
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • qp-dbbact

      Public
      Python
      •0•0•1•3•Updated Mar 12, 2024Mar 12, 2024

    • qtp-sequencing

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•0•0•1•Updated Feb 15, 2024Feb 15, 2024

    • gapc-test-suite

      Public
      Additional test data for "Bellman's GAP" (gapc)
      GAP
      •0•0•1•0•Updated Jan 12, 2024Jan 12, 2024

    • workflow_tuRNAble

      Public
      assess folding space changes for RNA sequence changes
      Python
      •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • phylofiller

      Public
      PhyloFiller
      Python
      •
      GNU General Public License v3.0
      •1•0•1•2•Updated Sep 27, 2023Sep 27, 2023

    • teaching_V-BI-BSA

      Public
      Jupyter Notebook
      •1•0•2•0•Updated Dec 15, 2022Dec 15, 2022

    • algorithm_traits_microbiome

      Public
      Use traits of bacterial isolated to infer microbioal community properties
      R
      •0•0•0•5•Updated Nov 3, 2022Nov 3, 2022

    • FlowSoFineApp

      Public
      R
      •0•0•2•1•Updated May 14, 2022May 14, 2022

    • FlowSoFine

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated Mar 8, 2022Mar 8, 2022

    • microbiome_apostolopoulos_dogs

      Public
      Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

    • gapc-cafe

      Public
      Bellman's cafe, i.e. interactive web pages to explore gapc instances
      TeX
      •0•0•0•0•Updated Apr 7, 2021Apr 7, 2021

    • microbiome_pax5

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 26, 2020Aug 26, 2020

    • funant

      Public
      fungal annotation tool
      MIT License
      •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020