Repositories list

• phip-stat

  Public
  Analysis tools for PhIP-seq experiments

  Jupyter Notebook

  •

  Apache License 2.0

  •9•12•1•0•Updated Jan 24, 2022Jan 24, 2022

• portable-files

  Public
  Local and remote filesystem IO, in Scala, for the JVM and JS; "portable NIO replacement"

  Scala

  •

  Apache License 2.0

  •1•3•0•0•Updated Apr 6, 2021Apr 6, 2021

• pepsyn

  Public
  Peptide library design

  Jupyter Notebook

  •

  Apache License 2.0

  •6•19•13•0•Updated Sep 8, 2020Sep 8, 2020

• robots

  Public
  Scripts for robots

  Python

  •0•0•0•0•Updated May 14, 2020May 14, 2020

• ll-util

  Public
  Laserson Lab Public Utilities

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated May 14, 2020May 14, 2020

• Amazon-S3-FileSystem-NIO2

  Public
  An S3 File System Provider for Java 7

  Java

  •

  MIT License

  •102•4•0•1•Updated Aug 27, 2019Aug 27, 2019

• single-cell-experiments

  Public
  Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark

  bioinformaticsgenomicssingle-cell+ 1human-cell-atlas

  Jupyter Notebook

  •8•13•2•0•Updated Mar 28, 2019Mar 28, 2019

• ndarray.scala

  Public
  N-dimensional arrays, with Zarr and HDF5 integrations

  hdf5zarrhuman-cell-atlas+ 3scalanetcdfndarray

  Scala

  •

  Apache License 2.0

  •3•16•7•0•Updated Feb 26, 2019Feb 26, 2019

• zappy

  Public archive
  Distributed processing with NumPy and Zarr

  distributed-computingdaskzarr+ 5human-cell-atlassparkbeamnumpypywren

  Python

  •

  Apache License 2.0

  •2•9•0•0•Updated Jan 22, 2019Jan 22, 2019

• utest

  Public
  A simple testing framework for Scala

  Scala

  •80•0•0•0•Updated Jan 22, 2019Jan 22, 2019

• epiphip

  Public
  explorations related to epitope prediction using phip-seq

  Jupyter Notebook

  •

  Apache License 2.0

  •1•0•0•0•Updated Jan 8, 2019Jan 8, 2019

• parquet-mr

  Public
  Apache Parquet

  Java

  •

  Apache License 2.0

  •1.4k•0•0•0•Updated Dec 28, 2018Dec 28, 2018

• parquet-format

  Public
  Apache Parquet

  Java

  •

  Apache License 2.0

  •428•0•0•0•Updated Dec 27, 2018Dec 27, 2018

• JBlosc

  Public
  Java interface for Blosc library

  HTML

  •5•1•0•0•Updated Oct 7, 2018Oct 7, 2018

• scsearch

  Public
  Index and search single cell data.

  single-cellhuman-cell-atlaselasticsearch

  Java

  •0•0•1•0•Updated Sep 19, 2018Sep 19, 2018

• google-cloud-java

  Public
  Google Cloud Client Library for Java

  Java

  •

  Apache License 2.0

  •1.1k•0•0•0•Updated Jul 27, 2018Jul 27, 2018

• thredds

  Public
  Thredds and netCDF-Java (CDM)

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •179•0•0•0•Updated Jul 27, 2018Jul 27, 2018

• anndata

  Public
  Annotated data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •152•0•0•1•Updated Jul 25, 2018Jul 25, 2018

• gcsfs

  Public
  Pythonic file-system interface for Google Cloud Storage

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •143•0•0•0•Updated Jul 25, 2018Jul 25, 2018

• zarr

  Public
  An implementation of chunked, compressed, N-dimensional arrays for Python.

  Jupyter Notebook

  •

  MIT License

  •273•0•0•0•Updated Jul 6, 2018Jul 6, 2018

• pribar

  Public
  Primers and barcodes

  Python

  •0•3•0•0•Updated May 11, 2018May 11, 2018

• hugo-academic

  Public
  The personal website framework for Hugo. Demo at

  HTML

  •

  MIT License

  •2.9k•0•0•0•Updated Nov 11, 2017Nov 11, 2017

• rimon

  Public
  Apache Spark backend for scalable interactive single-cell analytics

  Apache License 2.0

  •0•0•0•0•Updated Aug 24, 2017Aug 24, 2017

• airr-formats-old

  Public
  Thrift definitions for AIRR data

  Perl

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 7, 2016Jun 7, 2016