Repositories list

• phenotype.utils

  Public archive
  some utils

  Java

  •0•0•1•4•Updated Aug 1, 2023Aug 1, 2023

• robot_tests

  Public
  Makefile

  •0•0•0•0•Updated Feb 13, 2023Feb 13, 2023

• testobographs

  Public
  Java

  •0•0•0•3•Updated Apr 26, 2021Apr 26, 2021

• odk_utils

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Mar 12, 2021Mar 12, 2021

• OLS

  Public
  Ontology Lookup Service from SPOT at EBI

  JavaScript

  •

  Apache License 2.0

  •40•0•0•1•Updated Feb 23, 2021Feb 23, 2021

• robot_test

  Public
  Failing robot tests

  Makefile

  •0•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• obographs-test

  Public
  Makefile

  •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

• ontologies

  Public
  Will be deleted soon, dont use.

  Shell

  •0•0•0•0•Updated May 29, 2020May 29, 2020

• impc-ontology-pipeline

  Public archive
  IMPC ontology pipeline

  Jupyter Notebook

  •0•1•1•0•Updated May 18, 2020May 18, 2020

• eqwriter

  Public
  Java

  •0•1•1•0•Updated Aug 5, 2019Aug 5, 2019

• VFB_neo4j

  Public
  A repository of scripts for extending the OLS neo4J DB for use as a VFB back end server.

  HTML

  •1•0•0•0•Updated May 20, 2019May 20, 2019

• ontologyinferenceanalysis

  Public
  Analytics tool to get a brief understanding of the logical content of a set of ontologies, comparing different reasoners

  Java

  •0•0•0•0•Updated May 20, 2019May 20, 2019

• inferencereport

  Public
  Simple command line tool that outputs subsumptions and equivalences seperated by imports that caused them

  Java

  •0•0•0•0•Updated May 20, 2019May 20, 2019

• idserver.ui

  Public
  For demo purposes, no production code

  CSS

  •0•0•0•0•Updated May 20, 2019May 20, 2019

• ebi-patternanalysis-pipeline

  Public
  docker container that analyses all ontologies in the shared volumes corpus directory and returns markdown and csv files.

  HTML

  •0•0•0•0•Updated May 20, 2019May 20, 2019

• ro_survey

  Public
  RO Survey interactive shiny app (Dockerised)

  HTML

  •0•0•0•0•Updated May 20, 2019May 20, 2019

• pato_survey

  Public
  HTML

  •0•0•0•0•Updated Apr 3, 2019Apr 3, 2019

• hp_analysis

  Public
  HPO analysis results

  0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

• potato-phenotype-ontology

  Public
  HTML

  •0•0•0•0•Updated Oct 22, 2018Oct 22, 2018

• Pheno_odk_test

  Public
  A test repo demonstrating design pattern -based phenotype ontology development using the Ontology Development Kit

  Makefile

  •22•0•0•0•Updated Aug 7, 2018Aug 7, 2018

• docker-sbt-owlery

  Public
  Owlery server loaded with VFB.owl

  Shell

  •4•0•0•0•Updated May 31, 2018May 31, 2018

• docker-neo4j-knowledgebase

  Public
  Neo4j instance loaded with VFB KB

  Shell

  •1•0•0•0•Updated May 17, 2018May 17, 2018

• vfbtriplestore

  Public archive
  Do not use. Instance for loading basic RDF4J triplestore with instance data

  vfbvirtualflybrain

  Java

  •0•0•0•0•Updated Feb 7, 2018Feb 7, 2018

• r-knitr

  Public
  knits all Rmd files in shared volume

  Shell

  •0•0•0•0•Updated Feb 7, 2018Feb 7, 2018

• dipper-docker

  Public
  Basic dockerised version of Dipper (https://github.com/monarch-initiative/dipper).

  Shell

  •0•0•0•0•Updated Feb 5, 2018Feb 5, 2018

• Docker-OLS-loader

  Public archive
  Import data from OWL to NEO4J PROD DB

  Shell

  •2•0•0•0•Updated Feb 1, 2018Feb 1, 2018