Repositories list

• pykofamsearch-stable

  Public
  Fast implementation of KofamScan optimized for high-memory systems using PyHmmer

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 21, 2024Oct 21, 2024

• pyhmmsearch-stable

  Public
  Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• veba-stable

  Public
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes. Built by @jolespin, stable maintenance and containerization from NewAtlantis

  Python

  •

  GNU Affero General Public License v3.0

  •8•3•0•0•Updated Sep 25, 2024Sep 25, 2024

• na-erdos-fellows-monorepo

  Public
  The central location for code in the NewAtlantis fellowship program

  Jupyter Notebook

  •

  Apache License 2.0

  •21•2•0•1•Updated Aug 16, 2024Aug 16, 2024

• bioprospecting

  Public
  Jupyter Notebook

  •2•1•2•0•Updated Nov 24, 2023Nov 24, 2023

• nal-notebook-templates

  Public
  a collection of notebook templates that are reflected on the cloud lab

  Jupyter Notebook

  •1•0•0•1•Updated Nov 2, 2023Nov 2, 2023

• Living-Oceans

  Public
  🌊 Robust workflows for gathering data about your local ocean.

  pythonbioinformaticsmetagenomics+ 6python3bioinformatics-pipelinemetagenomics-datametagenomics-toolkitjyputer-notebookdesci

  Jupyter Notebook

  •1•13•0•0•Updated Jul 19, 2023Jul 19, 2023

• Mg-Traits

  Public
  Shell

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 13, 2023Jul 13, 2023

• .github

  Public
  0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

• protocol-labs-demo

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Jun 7, 2023Jun 7, 2023

• Metagenomics

  Public
  🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

  pythonbioinformaticsocean+ 10metagenomicspython3bioinformatics-pipelineplanktonmetagenomic-analysisgitcoinmetagenomic-pipeline+ 3

  Jupyter Notebook

  •

  Other

  •2•7•0•0•Updated Dec 18, 2022Dec 18, 2022

• DiffDock_GPU_Stable

  Public
  Dockerized Version of the DiffDock model from MIT, Stable Release Maintained through NewAtlantis

  Jupyter Notebook

  •

  Apache License 2.0

  •5•0•0•0•Updated Dec 13, 2022Dec 13, 2022

• presentations

  Public
  Materials notebooks for presentation/communications

  0•0•0•0•Updated Nov 10, 2022Nov 10, 2022

• DeepLabCut

  Public
  Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

  Python

  •

  GNU Lesser General Public License v3.0

  •1.7k•0•0•0•Updated Jul 29, 2022Jul 29, 2022