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genomeqc
PublicCompare the quality of multiple genomes, along with their annotations.tfactivity
PublicBioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.pixelator
PublicPipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)- A single cell transcriptomics pipeline for QC, integration and making the data presentable
variantbenchmarking
Publiconcoanalyser
Public- Demultiplexing pipeline for sequencing data
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
methylseq
PublicMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackeltools
Publicsarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingrangeland
PublicPipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.test-datasets
Publiccreatetaxdb
PublicParallelised and automated construction of metagenomic classifier databases of different toolstaxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic datananoseq
Publicconfigs
PublicConfig files used to define parameters specific to compute environments at different Institutionsspatialxe
Publicmethylong
Publichlatyping
Public