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@nimh-dsst National Institute of Mental Health Data Science & Sharing Team

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    41 repositories

    • dsst-etl

      Public
      importing leo's code to get around LFS restriction on forks
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•3•3•Updated Dec 24, 2024Dec 24, 2024

    • ArchiveFlow

      Public
      Python package to parse LabArchive notebooks to create and monitor data sources
      GNU General Public License v3.0
      •0•0•1•0•Updated Dec 23, 2024Dec 23, 2024

    • dsst-rtd

      Public
      DSST's readthedocs site repo.
      0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • lunch-and-learn

      Public
      Code that is shared during lunch and learn sessions
      Python
      •0•0•3•0•Updated Dec 23, 2024Dec 23, 2024

    • dataSci_job_ad_2024

      Public
      TeX
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nda-bids-upload

      Public
      For uploading BIDS data to the NDA.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•1•Updated Dec 17, 2024Dec 17, 2024

    • file-mapper

      Public
      An easy tool to copy/move/symlink files from one directory to the other!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • Git-Skits

      Public
      Code with video demos of common data science tools used at the NIMH
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • osm

      Public
      OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •3•1•9•3•Updated Nov 13, 2024Nov 13, 2024

    • Brain-Atlas-Checker

      Public
      A collection of scripts that checks the masks generated by aligning images to the Allen Brain Atlas
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 30, 2024Oct 30, 2024

    • cmn-website

      Public
      0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • nimh-dsst.github.io

      Public
      Redirect for the NIMH IRP Data Science and Sharing Team
      HTML
      •1•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • abcd-fasttrack2bids

      Public
      Python
      •2•0•16•0•Updated Sep 16, 2024Sep 16, 2024

    • dsst-defacing-pipeline

      Public
      Defacing algorithm to improve and evaluate accuracy for large datasets.
      Python
      •2•4•16•2•Updated Sep 11, 2024Sep 11, 2024

    • osm-rtrans-etl

      Public
      Extract, Transform, and load data associated with the rtransparent publication into a MongoDB database
      Dockerfile
      •0•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • nda-study-1887

      Public
      Scripts and data files used to convert anatomical MRI dicom data of the Autism Subtypes study to BIDS format, and to upload the dataset to NIMH Data Archive
      Python
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • bids-validator-comparator

      Public
      A small set of scripts to BIDS-validate and compare validator version outputs for OpenNeuro datasets.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • sharestats-leo-bsc

      Public
      Jupyter Notebook
      •1•0•0•0•Updated May 8, 2024May 8, 2024

    • OpenCogData

      Public
      Collection of publicly available cognitive task datasets
      cognitive-sciencecomputational-psychiatryopen-datasetscognitive-neuroscience
      JavaScript
      •
      MIT License
      •1•8•0•2•Updated Apr 17, 2024Apr 17, 2024

    • Irritability-ADHD-symptoms-and-inhibitory-control-in-the-ABCD-Study

      Public
      Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Mar 17, 2024Mar 17, 2024

    • DTI-Phenotyping

      Public
      Scripts used to curate and analyze the DTI-Phenotyping dataset.
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Mar 16, 2024Mar 16, 2024

    • dataSci_job_ad

      Public
      Open Data Scientist Job Ad
      2•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • ohbm2024tables

      Public
      Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • opendata_gpt

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • fmriprep_helpers

      Public
      Python
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • HPC_helpers

      Public
      Shell
      •2•2•8•0•Updated Nov 22, 2023Nov 22, 2023

    • ndx-photostim

      Public archive
      holographic photostimulation extension to NWB standard
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Nov 22, 2023Nov 22, 2023

    • dsst-poster

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • dataset-phenotypes

      Public
      Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
      tabular-dataabidedatasetphenotypicdata-dictionaryphenotypedatasetsbidsabcdukb
      Python
      •
      Creative Commons Zero v1.0 Universal
      •2•8•13•0•Updated Aug 1, 2023Aug 1, 2023

    • ctdb2bids

      Public
      An automated tool to go from a CTDB form legend and data download to BIDS phenotype TSV and JSON files.
      Python
      •
      MIT License
      •0•0•3•0•Updated May 17, 2023May 17, 2023