Repositories list

• PyPARRM

  Public
  Python port of the PARRM algorithm for removing periodic artefacts from signals.

  Python

  •

  MIT License

  •5•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• PyBispectra

  Public
  A Python signal analysis toolbox for computing spectral-domain interactions using the bispectrum.

  Python

  •

  MIT License

  •4•1•0•0•Updated Sep 20, 2024Sep 20, 2024

• INF

  Public
  Code for infrastructure and data standardization

  Jupyter Notebook

  •0•1•0•0•Updated Feb 29, 2024Feb 29, 2024

• PyPerceive

  Public
  Goal: Importing and using Perceive'd Percept data in Python

  Jupyter Notebook

  •

  MIT License

  •3•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• mne_bug_fixes

  Public
  MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1.3k•0•0•1•Updated Jan 15, 2024Jan 15, 2024

• ReTap

  Public
  ReTap is an open-source tool to generate automated UPDRS finger-tapping predictions based on index-finger accelerometer data

  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• PyGenStability

  Public
  PyGenStability: Multiscale community detection with generalized Markov Stability

  C++

  •

  GNU General Public License v3.0

  •11•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• tvb-multiscale

  Public
  Integration between TVB and NEST, for multiscale (co)simulations .

  Python

  •

  Other

  •25•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• PAC

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Jan 15, 2024Jan 15, 2024

• bids-specification

  Public
  Brain Imaging Data Structure (BIDS) Specification

  Python

  •

  Creative Commons Attribution 4.0 International

  •162•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• leaddbs

  Public
  Lead-DBS is a scientific toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.

  MATLAB

  •

  Other

  •98•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• findmycells

  Public
  An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• tvb-root

  Public
  Main TVB codebase

  Jupyter Notebook

  •

  Other

  •105•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• roiconnect

  Public
  ROI connectivity analysis in EEG

  HTML

  •17•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• CEBRA

  Public
  Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

  Python

  •

  Other

  •76•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• antx2

  Public
  Registration of animal MR brain data to a standard (published) atlas. The pipeline works with invivo or exvivo (skull-stripped) MR-data for the following species: mouse, rat, Etruscan shrew and cat. *OS: Windows, MAC, Linux. *Matlab: R2016a or later.

  MATLAB

  •

  Other

  •3•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• py_neuromodulation

  Public
  Real-time analysis of intracranial neurophysiology recordings.

  Python

  •

  MIT License

  •11•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• .github

  Public
  0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• MARBLE

  Public
  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets. https://agosztolai.github.io/MARBLE/

  Python

  •

  MIT License

  •4•0•0•0•Updated Jan 5, 2024Jan 5, 2024

• RVGP

  Public
  A generalised Gaussian process method for learning vector fields over non-Euclidean domains. Particularly useful for EEG data analysis and to regularise vector fields using global structures.

  HTML

  •2•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• hackathon_2023

  Public
  Repository for the ReTune Hackathon 2023

  GNU General Public License v3.0

  •0•2•0•0•Updated Sep 28, 2023Sep 28, 2023

• ndx_ecg

  Public
  This extension is developed to extend NWB data standards to incorporate ECG recordings.

  Python

  •

  MIT License

  •0•1•0•0•Updated Sep 25, 2023Sep 25, 2023

• BSI-Zoo

  Public
  A brain source imaging zoo!

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•0•0•Updated Aug 25, 2023Aug 25, 2023

• sim2bids

  Public
  App to load, transform & download BIDS compliant data

  HTML

  •

  MIT License

  •2•0•0•0•Updated Jul 3, 2023Jul 3, 2023

• FCsim

  Public
  Simulation on different pipelines to analyse functional connectivity from EEG data

  MATLAB

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Jun 23, 2023Jun 23, 2023

• neurokin

  Public
  correlation between neural and kinematics, refactored and expansion of visualization and analysis methods. kinematic analysis based on a modified version of GGait.

  Jupyter Notebook

  •4•0•0•0•Updated Jun 20, 2023Jun 20, 2023

• let_it_be_3D

  Public
  2D to 3D tracking data conversion pipeline

  Python

  •

  GNU General Public License v3.0

  •0•5•1•0•Updated Jun 20, 2023Jun 20, 2023

• perceive

  Public
  This repository contains MATLAB code to extract data from the Medtronic Percept bidirectional brain computer interface device for adaptive deep brain stimulation.

  M

  •

  Apache License 2.0

  •16•0•0•0•Updated Jun 8, 2023Jun 8, 2023

• hcga

  Public
  Highly Comparative Graph Analysis - Code for network phenotyping

  Python

  •

  GNU General Public License v3.0

  •14•0•0•0•Updated May 15, 2023May 15, 2023

• IPID1_inferring_phase_isostable_dynamics_order1

  Public
  Python

  •

  MIT License

  •2•0•0•0•Updated Dec 8, 2022Dec 8, 2022