Repositories list

• dynamic

  Public
  Creating dynamic documents with quarto

  TeX

  •4•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• reproducibility

  Public
  Reproducibility slide deck

  reproducibilityreplication

  JavaScript

  •0•2•0•0•Updated Nov 22, 2023Nov 22, 2023

• more-plots-with-ggplot2

  Public
  0•0•0•0•Updated Oct 18, 2023Oct 18, 2023

• geo-effect-sizes

  Public
  NCBI GEO RNA-seq DE analysis effect sizes project

  Python

  •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

• geo-htseq-paper

  Public
  Code used to generate summaries, models and figures for article "A field-wide assessment of differential high throughput sequencing reveals widespread bias".

  R

  •

  MIT License

  •1•0•0•0•Updated Mar 5, 2023Mar 5, 2023

• geo-htseq

  Public
  Analysis of p value sets submitted to NCBI GEO database as supplementary files

  snakemakereproducibilitydifferential-expression+ 2ht-seqp-values

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 5, 2023Mar 5, 2023

• purrr-apply

  Public
  purrr-apply slides

  MIT License

  •0•0•0•0•Updated Nov 9, 2022Nov 9, 2022

• regex-slides

  Public
  Introductory slides to regular expressions, based on regex help

  MIT License

  •0•0•0•0•Updated Nov 2, 2022Nov 2, 2022

• r_course_2022

  Public
  1•0•0•0•Updated Aug 12, 2022Aug 12, 2022

• covid-19-cases

  Public
  Simple visualizations of COVID-19 cases and deaths

  covid-19covid19-data

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

• docker-stan

  Public
  Dockerfiles with rstan and CmdStan

  Dockerfile

  •

  GNU General Public License v2.0

  •11•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• iterate-model

  Public
  R data structures, iteration and modeling class

  4•0•0•0•Updated Oct 7, 2021Oct 7, 2021

• regex-demo

  Public
  regular_expression

  HTML

  •5•0•0•0•Updated Oct 7, 2021Oct 7, 2021

• datetime-demo

  Public
  Working with dates and times

  HTML

  •7•0•0•0•Updated Oct 7, 2021Oct 7, 2021

• tidy-data

  Public
  Data wrangling class

  Shell

  •5•0•0•0•Updated Sep 30, 2021Sep 30, 2021

• transform-data-with-dplyr

  Public
  dplyr five verbs

  R

  •10•0•0•0•Updated Sep 21, 2021Sep 21, 2021

• making-plots-with-ggplot

  Public
  Introductory slides

  R

  •10•0•0•0•Updated Sep 13, 2021Sep 13, 2021

• 2021-rstats

  Public
  2021 Fall R stats course at University of Tartu Institute of Technology

  R

  •3•2•0•0•Updated Sep 8, 2021Sep 8, 2021

• simulate-rnaseq

  Public
  Workflow to simulate an RNA-seq reads and perform DE-analysis

  simulationdeseq2rna-seq-pipeline+ 2snakemake-workflowpolyester

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 29, 2021Apr 29, 2021

• taavipall_2020

  Public
  Taavis code

  HTML

  •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• hip-fractures

  Public
  Hip fractures dataset to learn data wrangling and modeling

  Other

  •0•0•0•0•Updated Sep 30, 2020Sep 30, 2020

• suvekool_bayes_2020

  Public
  Materials, data, and scripts for the Introduction to Bayesian inference in RStan & brms workshop

  HTML

  •

  MIT License

  •0•0•0•0•Updated Aug 27, 2020Aug 27, 2020

• squire

  Public
  SEIR transmission model of COVID-19. Documentation at:

  R

  •

  MIT License

  •28•0•0•0•Updated Jun 11, 2020Jun 11, 2020

• koroonakaart

  Public
  App to show statistics about the COVID-19 epidemic in Estonia.

  Vue

  •33•0•0•0•Updated Apr 19, 2020Apr 19, 2020

• lectures

  Public
  Lecture materials

  lecture-material

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •3•5•6•0•Updated Apr 18, 2020Apr 18, 2020

• final-2019

  Public
  MIT License

  •4•0•0•0•Updated Oct 22, 2019Oct 22, 2019

• classes-2019

  Public
  Collection of materials that we use in R data analysis classes

  R

  •11•1•0•0•Updated Oct 16, 2019Oct 16, 2019

• bayesiraamat

  Public
  R bayes statistics brochure, in Estonian

  bayesbayesian-data-analysisr-stats

  TeX

  •

  Other

  •2•0•2•0•Updated Oct 4, 2019Oct 4, 2019

• ylo_excercise_1

  Public
  HTML

  •1•0•0•0•Updated Sep 17, 2019Sep 17, 2019

• 2019-rstats

  Public template
  R stats TalTech 2019 programme

  gitggplot2dplyr+ 3modelingtidy-databrms

  R

  •6•7•0•0•Updated Sep 17, 2019Sep 17, 2019