Repositories list

• positive-feedback-cluster-dynamics

  Public
  Some C code to supplement the patchy-ecosterics repository

  Python

  •0•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• collective-responses-of-flocking-sheep-to-herding-dog

  Public
  This repository contains codes for data and agent-based model analysed in the article "Collective responses of flocking sheep (Ovis aries) to a herding dog (border collie)".

  collective-behaviourherdingescape-behaviour+ 1agent-based-herding-model

  MATLAB

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• schooling_fish

  Public
  This repository contains codes and data used in the research article "Noise-Induced Schooling of Fish" (https://doi.org/10.1038/s41567-020-0787-y). Currently to use any material on this repository please contact Jitesh Jhawar (jiteshjhawar@gmail.com)

  MATLAB

  •

  GNU General Public License v3.0

  •0•10•0•0•Updated Oct 16, 2024Oct 16, 2024

• PyDaddy

  Public
  Python package to discover stochastic differential equations from time series data

  time-seriessdestochastic-differential-equations+ 2time-series-analysispython

  Python

  •

  GNU General Public License v3.0

  •10•92•0•0•Updated Sep 18, 2024Sep 18, 2024

• Bhat_Guttal_2023_finite_evolution

  Public
  Scripts and data accompanying Bhat and Guttal 2023, "Eco-evolutionary dynamics for finite populations from first principles and noise-induced reversal of selection".

  Jupyter Notebook

  •1•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• patchy-ecosterics

  Public
  Investigating cluster dynamics in models of patchy ecosystems

  cellular-automatapercolation-theoryphase-transitions+ 2critical-thresholdscluster-dynamics

  Python

  •2•2•0•0•Updated Jun 14, 2024Jun 14, 2024

• trait-variation

  Public
  Python

  •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

• Cluster-Size-PLD

  Public
  Producing Cluster Size PLD in R

  R

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

• Asynchronous-model-apuroopa

  Public
  MATLAB

  •1•0•0•0•Updated Aug 14, 2023Aug 14, 2023

• data-driven-mesoscale-sde

  Public
  Code for the paper: Data-driven discovery of stochastic dynamical equations of collective motion. Nabeel, A., Jadhav, V., Sire, C., Theraulaz, G., Escobedo, R., Iyer, S. K., & Guttal, V. (2023).

  stochastic-differential-equationsvicsek-modelmesoscale+ 2collective-behaviourself-propelled-particles

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jun 28, 2023Jun 28, 2023

• MOTHe-GUI

  Public
  Python

  •

  MIT License

  •3•4•1•0•Updated Jun 26, 2023Jun 26, 2023

• lekking-collective-beh

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Feb 20, 2023Feb 20, 2023

• Lekking-Perspective

  Public
  Lek as collective behaviour - code and data for male and female activity heatmap

  R

  •1•0•0•0•Updated Dec 3, 2022Dec 3, 2022

• cohesion-in-collective-motion

  Public
  MATLAB

  •

  MIT License

  •1•2•0•0•Updated Oct 7, 2022Oct 7, 2022

• mothe

  Public
  An end to end pipeline to track multiple objects against a heterogeneous background with just 5 lines of code

  Python

  •

  MIT License

  •1•1•0•0•Updated Sep 13, 2022Sep 13, 2022

• alt-stable-states-neindia

  Public
  Codes for the paper: Sarania, Guttal, Tamma, 2022, The absence of alternative stable states in vegetation cover of northeastern India, Royal Society Open Science.

  2•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• shreesh-tracking-project

  Public
  All the code and files used for Shreesh's fish tracking project

  Python

  •0•0•0•0•Updated Apr 22, 2022Apr 22, 2022

• PercolationModels

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• blackbuck_herd_escape_dynamics

  Public
  0•0•0•0•Updated Oct 11, 2021Oct 11, 2021

• coarse-graining

  Public
  The codes in this repository coarse-grain the spatial data and calculate the general EWS

  C++

  •2•0•0•0•Updated Oct 4, 2021Oct 4, 2021

• MergeSplit

  Public
  C++

  •

  MIT License

  •1•0•0•0•Updated Sep 29, 2021Sep 29, 2021

• PowerLawCriticalityPaper

  Public
  Codes and data files for the paper "Clustering and correlations: Inferring resilience from spatial patterns in ecosystems"

  R

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Sep 23, 2021Sep 23, 2021

• seir-covid-india

  Public
  R ShinyApp for Age Structured SEIR model for Covid-19

  R

  •

  MIT License

  •0•1•0•0•Updated Sep 23, 2021Sep 23, 2021

• Characterizing_noise

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 23, 2021Sep 23, 2021

• Hemigrammus-Data-Correction

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 21, 2021Sep 21, 2021

• cluster-dynamics

  Public
  cluster dynamics in some interacting particle systems

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jul 25, 2021Jul 25, 2021

• demographic-noise

  Public
  script related to the publication: Majumder, S., Das, A., Kushal, A., Sankaran, S., & Guttal, V. (2021). Finite-size effects, demographic noise, and ecosystem dynamics. The European Physical Journal Special Topics, 1-13. https://link.springer.com/article/10.1140/epjs/s11734-021-00184-z

  C++

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021

• EpiTracSim

  Public
  Epidemic contact tracing simulator

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •2•0•0•0•Updated May 2, 2020May 2, 2020

• temp_change

  Public
  A CNN based pipeline to detect and track animals in the videos taken in natural settings

  Python

  •0•1•0•0•Updated Mar 24, 2020Mar 24, 2020

• Inferring-critical-thresholds

  Public
  This repository contains all the codes used for the paper "Inferring critical thresholds of ecosystem transition from spatial data".

  C++

  •1•0•0•0•Updated Mar 13, 2019Mar 13, 2019