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    353 repositories

    • v6-omop-cohort-diagnostics

      Public
      Python
      •
      MIT License
      •1•0•0•2•Updated Aug 8, 2025Aug 8, 2025

    • BioCypher-OT

      Public
      Python
      •
      MIT License
      •5•1•0•0•Updated Aug 7, 2025Aug 7, 2025

    • biochatter

      Public
      Backend library for conversational AI in biomedicine
      Jupyter Notebook
      •
      MIT License
      •49•0•0•1•Updated Aug 6, 2025Aug 6, 2025

    • kotobuki

      Public
      Update Usagi mappings with kotobuki
      pythonetlohdsiomopusagiomop-cdm
      Python
      •
      Apache License 2.0
      •0•1•1•1•Updated Aug 5, 2025Aug 5, 2025

    • biochatter-server

      Public
      Flask server for BioChatter integration into web apps
      Python
      •
      MIT License
      •10•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • cbioportal-frontend

      Public
      React Frontend of cBioPortal 🎉
      TypeScript
      •
      GNU Affero General Public License v3.0
      •338•0•0•15•Updated Jul 31, 2025Jul 31, 2025

    • OHDSI-Usagi

      Public
      Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
      Java
      •32•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • react-json-to-table

      Public
      react-json-to-table
      TypeScript
      •
      GNU General Public License v3.0
      •29•37•14•4•Updated Jul 18, 2025Jul 18, 2025

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •7•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • ot-ui-apps

      Public
      JavaScript
      •
      Apache License 2.0
      •13•1•0•19•Updated Jun 24, 2025Jun 24, 2025

    • omop-cdm

      Public
      SQLAlchemy definition of the OHDSI OMOP CDM
      Python
      •
      Apache License 2.0
      •0•2•1•2•Updated Jun 19, 2025Jun 19, 2025

    • v6-basic-omop-queries

      Public
      vantage6
      Python
      •
      MIT License
      •2•0•0•0•Updated May 8, 2025May 8, 2025

    • fairspace

      Public
      Fairspace provides a secure environment for managing research data.
      metadatardfwebdavfairresearch-datafairspace
      JavaScript
      •
      Apache License 2.0
      •6•14•0•4•Updated May 7, 2025May 7, 2025

    • synthetic-breast-cancer-OMOP-database

      Public
      OMOP database for IKNL synthetic breast cancer dataset
      PLpgSQL
      •3•0•0•0•Updated May 4, 2025May 4, 2025

    • genetics-pipe

      Public
      Scala
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • cbioportal

      Public
      cBioPortal topic branches at The Hyve
      cbioportal
      Java
      •
      GNU Affero General Public License v3.0
      •699•3•0•0•Updated Apr 10, 2025Apr 10, 2025

    • OHDSI-WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •92•0•0•3•Updated Apr 9, 2025Apr 9, 2025

    • report-vulnerability-image

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • report-vulnerability

      Public
      Github action for reporting a vulnerability
      MIT License
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •12•0•1•3•Updated Apr 3, 2025Apr 3, 2025

    • biocypher

      Public
      A unifying framework for biomedical research knowledge graphs
      Python
      •
      MIT License
      •39•1•0•8•Updated Apr 2, 2025Apr 2, 2025

    • vantage6

      Public
      The main vantage6 repository: code for the central server, nodes, CLI and Python Client
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • genetics-v2g-data

      Public
      Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics
      Python
      •
      Apache License 2.0
      •7•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Other
      •6•0•0•8•Updated Mar 10, 2025Mar 10, 2025

    • Capr-PLUS

      Public
      Cohort definition Application Programming in R fork for PHEMS project
      R
      •
      Apache License 2.0
      •18•0•0•1•Updated Mar 6, 2025Mar 6, 2025

    • cbioportal-core

      Public
      Externalized cBioPortal Core
      Java
      •21•0•0•1•Updated Feb 17, 2025Feb 17, 2025

    • biochatter-next

      Public
      The advanced implementation for BioChatter, using Next.js
      TypeScript
      •
      MIT License
      •9•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • ManagementPortal

      Public
      Custom client branches for Management Portal
      Kotlin
      •
      Apache License 2.0
      •19•0•0•3•Updated Dec 16, 2024Dec 16, 2024

    • fairspace-keycloak

      Public
      Helm chart for installing Keycloak for Fairspace
      keycloakhelm-chartfairspace
      Mustache
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • genetics-sumstat-data

      Public
      Workflows for processing summary statistics files for Open Targets Genetics
      HTML
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 26, 2024Nov 26, 2024