Repositories list

• manuscript-mag-net

  Public
  This repository is associated with a biorxiv preprint for the Mag-Net EV enrichment method.

  plasmaproteomicsquantitation+ 1vesicles

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Dec 14, 2024Dec 14, 2024

• nf-dia-batch-correction

  Public
  Perform normalization and batch correction on one or more Skyline documents

  Nextflow

  •

  Apache License 2.0

  •1•1•0•0•Updated Nov 8, 2024Nov 8, 2024

• manuscript-qc-system-suitability

  Public
  This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.

  quality-controlproteomicsmass-spectrometry+ 2data-independent-acquisitiondata-dependent-acquisition

  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 4, 2024Sep 4, 2024

• manuscript-stellar-biofluid

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• nf-pdc-dia

  Public
  Nextflow

  •1•0•0•0•Updated May 2, 2024May 2, 2024

• panoramaclient

  Public
  Java

  •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

• AstralBenchmarking

  Public
  Analysis code to benchmark the Astral mass analyzer

  R

  •

  Apache License 2.0

  •1•3•0•0•Updated May 31, 2023May 31, 2023

• wdl_pipelines

  Public
  WDL

  •0•0•0•0•Updated May 31, 2023May 31, 2023

• ADBrainCleanDiagDIA

  Public
  A Peptide-Centric Quantitative Proteomics Dataset for the Phenotypic Assessment of Alzheimer’s Disease

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• single_molecule_counting

  Public
  Jupyter Notebook

  •

  Other

  •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

• ADBrainCleanDiagDIA_HIPP-DashBoard

  Public
  HTML

  •0•0•0•0•Updated Jan 9, 2023Jan 9, 2023

• ADBrainCleanDiagDIA_SMTG-DashBoard

  Public
  HTML

  •0•0•0•0•Updated Dec 23, 2022Dec 23, 2022

• dynamic-DIA

  Public
  Code for dynamic DIA method

  Jupyter Notebook

  •1•1•0•0•Updated Sep 21, 2022Sep 21, 2022

• Narrow-DIA-Search

  Public
  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Apr 12, 2022Apr 12, 2022

• iontrap_vs_orbitrap

  Public
  Analysis code used in the manuscript "Comparison of unit resolution versus high-resolution accurate mass for parallel reaction monitoring"

  Python

  •1•1•0•0•Updated Apr 13, 2021Apr 13, 2021

• panorama-examples

  Public
  Examples for working with Panorama servers (https://panoramaweb.org)

  Python

  •0•0•0•0•Updated Apr 28, 2020Apr 28, 2020