Repositories list

• A3B3_paper_code

  Public
  Code used in the "De novo design of parallel and antiparallel A3B3 heterohexameric α-helical barrels" paper.

  Jupyter Notebook

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• CC_exchange

  Public
  Code related to the "Exchange, promiscuity, and orthogonality in de novo designed coiled-coil peptide assemblies" study

  Jupyter Notebook

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• Socket2_colab

  Public
  Jupyter Notebook

  •

  MIT License

  •1•3•0•1•Updated Dec 8, 2023Dec 8, 2023

• ccbuilder2

  Public
  A web application for atomistic modelling of coiled coils and collagens.

  javascriptdockerscience+ 11flaskmongodbelmweb-appprotein-structureproteinscientific-computing+ 4

  Elm

  •

  MIT License

  •3•4•10•0•Updated Nov 22, 2023Nov 22, 2023

• CD-master

  Public
  A class for processing CD data of various formats

  Python

  •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

• array_sensing_data_analysis

  Public
  Repository of iPython notebooks of BADASS analysis plus the input data (in xlsx file format)

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 28, 2023Jan 28, 2023

• array_sensing

  Public
  Code to train ML classifiers for differential sensing data presented in Dawson et al., 2023

  Python

  •

  MIT License

  •0•1•0•0•Updated Jan 28, 2023Jan 28, 2023

• Codes-and-SI_data

  Public
  This folder contains customized scripts and processed data linked to various publications

  0•0•0•0•Updated Apr 19, 2022Apr 19, 2022

• multiple_aromatic_paper_2021

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 7, 2021Jan 7, 2021

• isocket

  Public
  isocket web applicaton

  Python

  •1•5•13•0•Updated Jul 27, 2018Jul 27, 2018

• maintaining_and_breaking_paper_2018

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2018Jul 9, 2018

• isambard

  Public archive
  Intelligent System for Analysis, Model Building And Rational Design.

  apibioinformaticsstructural-biology+ 9computational-biologymodellingprotein-designcoiled-coilcollagenpythonanalysis+ 2

  Python

  •

  MIT License

  •4•9•0•0•Updated Apr 20, 2018Apr 20, 2018

• isambard_paper_2016

  Public
  This repository contains the files used to generate the models shown in [ISAMBARD 2016 Publication]

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2016Nov 14, 2016