flu_ppi

Scripts for the retrieval and context filtering of network neighborhoods of query proteins in STRING

These scripts have been used in: Brief Bioinform bbx029. https://doi.org/10.1093/bib/bbx029

Sample codes that contain vertex- and edge-based context filtering are in: https://github.com/pampernickel/flu_ppi/blob/master/sample_codes/sampleScripts.r

All data required for the sample scripts are in: https://github.com/pampernickel/flu_ppi/tree/master/data