Further housekeeping of installation scripts

README.md

@@ -2,8 +2,12 @@
 
 MCMC methods for neural networks.
 
-eeyore can be installed using anaconda or pip. The anaconda installation does not include ODE modelling functionalilty based
-on torchdiffeq.
+eeyore can be installed using pip or anaconda. The anaconda installation does not include ODE modelling functionalilty based on torchdiffeq.
+
+To install eeyore using pip, run
+```
+pip install eeyore
+```
 
 To install eeyore using anaconda, firstly add the required channels by running
 ```
@@ -18,8 +22,3 @@ To install eeyore using anaconda without adding any channels, run
 ```
 conda install -c papamarkou -c pytorch -c conda-forge eeyore
 ```
-
-To install eeyore using pip, run
-```
-pip install eeyore
-```

eeyore/__init__.py

@@ -1 +1 @@
-__version__ = '0.0.12'
+__version__ = '0.0.13'

installation/anaconda.md

@@ -24,7 +24,7 @@ anaconda login
 ```
 cd $HOME
 conda skeleton pypi eeyore
-conda build --python 3.8 eeyore
+conda build --python 3.6 eeyore
 ```
 
 ### Upload to anaconda

installation/dev.sh

@@ -0,0 +1,33 @@
+#!/bin/bash
+
+# Start up script for setting up environment on Ubuntu 20.04 LTS
+
+export PKGNAME='eeyore'
+export PYVERSION='3.6'
+export CONDADIR="$HOME/opt/continuum/miniconda/miniconda3"
+export PYPKGDIR="$HOME/opt/python/packages"
+export CONDABIN="$CONDADIR/bin/conda"
+export CONDASCRIPT='Miniconda3-latest-Linux-x86_64.sh'
+export PKGURL="https://github.com/papamarkou/$PKGNAME.git"
+
+sudo apt-get update
+
+sudo apt-get install tree
+
+wget https://repo.anaconda.com/miniconda/$CONDASCRIPT
+chmod u+x $CONDASCRIPT
+
+$SHELL $CONDASCRIPT -b -p $CONDADIR
+
+$CONDABIN create -n $PKGNAME -y python=$PYVERSION
+
+$CONDABIN init $(basename $SHELL)
+$CONDABIN config --set auto_activate_base false
+
+mkdir -p $PYPKGDIR
+cd $PYPKGDIR
+git clone $PKGURL
+cd $PKGNAME
+python setup.py develop --user
+
+rm $CONDASCRIPT

installation/gcloud.sh

@@ -9,4 +9,4 @@ gcloud compute instances create \
   --image-family=ubuntu-2004-lts \
   --no-restart-on-failure \
   --maintenance-policy=terminate \
-  --metadata-from-file startup-script=gstartup.sh
+  --metadata-from-file startup-script=gdev.sh

installation/gdev.sh

@@ -0,0 +1,36 @@
+#!/bin/bash
+
+# Start up script for setting up environment on Ubuntu 20.04 LTS
+
+export METAUSER='theodore'
+export BASEDIR="/home/$METAUSER"
+export PKGNAME='eeyore'
+export PYVERSION='3.6'
+export CONDADIR="$HOME/opt/continuum/miniconda/miniconda3"
+export PYPKGDIR="$HOME/opt/python/packages"
+export CONDABIN="$CONDADIR/bin/conda"
+export CONDASCRIPT='Miniconda3-latest-Linux-x86_64.sh'
+export PKGURL="https://github.com/papamarkou/$PKGNAME.git"
+
+sudo apt-get update
+
+sudo apt-get install tree
+
+su - $METAUSER -c "wget https://repo.anaconda.com/miniconda/$CONDASCRIPT"
+su - $METAUSER -c "chmod u+x $CONDASCRIPT"
+
+su - $METAUSER -c "$SHELL $CONDASCRIPT -b -p $CONDADIR"
+
+su - $METAUSER -c "$CONDABIN create -n $PKGNAME -y python=$PYVERSION"
+
+su - $METAUSER -c "$CONDABIN init $(basename $SHELL)"
+su - $METAUSER -c "$CONDABIN config --set auto_activate_base false"
+
+su - $METAUSER -c "mkdir -p $PYPKGDIR;
+cd $PYPKGDIR;
+git clone $PKGURL;
+cd $PKGNAME;
+$CONDABIN activate $PKGNAME;
+python setup.py develop --user"
+
+rm $CONDASCRIPT

installation/gstartup.sh → installation/gstable.sh

@@ -2,15 +2,12 @@
 
 # Start up script for setting up environment on Ubuntu 20.04 LTS
 
-METAUSER='theodore'
-BASEDIR="/home/$METAUSER"
-
+export METAUSER='theodore'
+export BASEDIR="/home/$METAUSER"
 export PKGNAME='eeyore'
-
+export PYVERSION='3.6'
 export CONDADIR="$BASEDIR/opt/continuum/miniconda/miniconda3"
-
 export CONDABIN="$CONDADIR/bin/conda"
-
 export CONDASCRIPT='Miniconda3-latest-Linux-x86_64.sh'
 
 sudo apt-get update
@@ -22,7 +19,7 @@ su - $METAUSER -c "chmod u+x $CONDASCRIPT"
 
 su - $METAUSER -c "$SHELL $CONDASCRIPT -b -p $CONDADIR"
 
-su - $METAUSER -c "$CONDABIN create -n $PKGNAME -y -c papamarkou -c pytorch -c conda-forge python=3.8 $PKGNAME"
+su - $METAUSER -c "$CONDABIN create -n $PKGNAME -y -c papamarkou -c pytorch -c conda-forge python=$PYVERSION $PKGNAME"
 
 su - $METAUSER -c "$CONDABIN init $(basename $SHELL)"
 su - $METAUSER -c "$CONDABIN config --set auto_activate_base false"

installation/meta.yaml

@@ -1,5 +1,5 @@
 {% set name = "eeyore" %}
-{% set version = "0.0.12" %}
+{% set version = "0.0.13" %}
 
 package:
   name: "{{ name|lower }}"

installation/startup.sh → installation/stable.sh

@@ -3,11 +3,9 @@
 # Start up script for setting up environment on Ubuntu 20.04 LTS
 
 export PKGNAME='eeyore'
-
+export PYVERSION='3.6'
 export CONDADIR="$HOME/opt/continuum/miniconda/miniconda3"
-
 export CONDABIN="$CONDADIR/bin/conda"
-
 export CONDASCRIPT='Miniconda3-latest-Linux-x86_64.sh'
 
 sudo apt-get update
@@ -19,7 +17,7 @@ chmod u+x $CONDASCRIPT
 
 $SHELL $CONDASCRIPT -b -p $CONDADIR
 
-$CONDABIN create -n $PKGNAME -y -c papamarkou -c pytorch -c conda-forge python=3.8 $PKGNAME
+$CONDABIN create -n $PKGNAME -y -c papamarkou -c pytorch -c conda-forge python=$PYVERSION $PKGNAME
 
 $CONDABIN init $(basename $SHELL)
 $CONDABIN config --set auto_activate_base false