A software suite for multi-3D (epi)genomics
Suite of tools to analyse and visualise 3D genome architecture, transcription and epigenetics.
python setup.py install --user
To run the transcriptome 3D map you must have the 2 3D coordinates files ready (for the genome and for the genes) and then run:
great3D -g <genome_coordinates_table> -s <genes_coordinates_table> -e <gene_expression_table>
Then a Dash application will launch on your local machine a you can access it by pointing your browser at http://127.0.0.1:8050/
Copyright (c) 2016-2022, Costas Bouyioukos, Universite Paris Cite et UMR7216
Project based on the Computational Molecular Science Python Cookiecutter version 1.6.
Several students have contributed code in the initial stages of the project.
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First of all Miara Rakotomavo's M1 internship. Code into dev_Miara directory on dev_students branch.
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We have cloned-merged three repositories from 3 projet_longues student coding projects into respective directories on the dev_students branch.
- Helene Kabbech 3D_transcription_map
- Hocine Meraouna 3D_transmap_Meraouna
- Adam Belaiche 3DtranscriptionMap