GitHub - paulaidt/CFMH

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
input_files		input_files
logs/local		logs/local
results		results
scripts		scripts
workflow		workflow
README.txt		README.txt
config.yaml		config.yaml
environment.yml		environment.yml
rule_graph.svg		rule_graph.svg
run_slurm_workflow.sh		run_slurm_workflow.sh
run_workflow.sh		run_workflow.sh
snakemake_report.html		snakemake_report.html
test_rule_graph.sh		test_rule_graph.sh

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Authors: 
    - Lluis Grifols
    - Paula Iborra
    - Aina Montalban


1. Install enviroment:
> conda env create -f environment.yml

2. Define all variables in `config.yaml`

3. Execute test workflow dryrun:
> ./test_rule_graph.sh

4. Execute run workflow:
> ./run_workflow.sh

Details of the workflow `rule_graph.svg`
Details of the execution in `snakemake_report.html`