GitHub - pauljensen/tiger: Toolbox for Integrating Genome-scale metabolism, Expression, and Regulation

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Toolbox for Integrating Genome-scale metabolism, Expression, and Regulation

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Name		Name	Last commit message	Last commit date
Latest commit History 173 Commits
+simpl		+simpl
@cmpi		@cmpi
cobra		cobra
elf		elf
parsing		parsing
test		test
tie		tie
util		util
.gitignore		.gitignore
.hgignore		.hgignore
CHANGELOG_v1.0.1.txt		CHANGELOG_v1.0.1.txt
CHANGELOG_v1.2.0-beta.txt		CHANGELOG_v1.2.0-beta.txt
CHANGELOG_v1.3.0.txt		CHANGELOG_v1.3.0.txt
Compound.m		Compound.m
Reactable.m		Reactable.m
Reaction.m		Reaction.m
TigerModel.m		TigerModel.m
about_tiger.m		about_tiger.m
add_column.m		add_column.m
add_constraint.m		add_constraint.m
add_diff.m		add_diff.m
add_growth_constraint.m		add_growth_constraint.m
add_operon.m		add_operon.m
add_row.m		add_row.m
add_rule.m		add_rule.m
assert_tiger.m		assert_tiger.m
bind_mets.m		bind_mets.m
bind_var.m		bind_var.m
bound_lhs.m		bound_lhs.m
check_metabolite_drains.m		check_metabolite_drains.m
check_tiger.m		check_tiger.m
clear_solver_options.m		clear_solver_options.m
close_bounds.m		close_bounds.m
cobra_to_tiger.m		cobra_to_tiger.m
compile_to_cobra.m		compile_to_cobra.m
constraintset.m		constraintset.m
convert_gpr.m		convert_gpr.m
convert_ids.m		convert_ids.m
create_empty_tiger.m		create_empty_tiger.m
create_exchange_reactions.m		create_exchange_reactions.m
extract_cobra.m		extract_cobra.m
fast_fva.m		fast_fva.m
fast_fva2.m		fast_fva2.m
fba.m		fba.m
find_associated_rules.m		find_associated_rules.m
find_exchange_rxns.m		find_exchange_rxns.m
find_infeasible_rules.m		find_infeasible_rules.m
fva.m		fva.m
get_solver.m		get_solver.m
get_solver_options.m		get_solver_options.m
is_tiger.m		is_tiger.m
make_milp.m		make_milp.m
make_validated_struct.m		make_validated_struct.m
minimal_genome.m		minimal_genome.m
moma.m		moma.m
open_bounds.m		open_bounds.m
parse_gpr_string.m		parse_gpr_string.m
parse_reaction_equation.m		parse_reaction_equation.m
read_rules.m		read_rules.m
remove_column.m		remove_column.m
remove_null_rules.m		remove_null_rules.m
remove_row.m		remove_row.m
remove_rule.m		remove_rule.m
sample_vars.m		sample_vars.m
scale_bounds.m		scale_bounds.m
set_fieldval.m		set_fieldval.m
set_solver.m		set_solver.m
set_solver_option.m		set_solver_option.m
set_var.m		set_var.m
show_exchange_rxns.m		show_exchange_rxns.m
show_sol.m		show_sol.m
show_tiger.m		show_tiger.m
single_gene_ko.m		single_gene_ko.m
solve_tiger.m		solve_tiger.m
start_tiger.m		start_tiger.m
strprefix.m		strprefix.m
toString.m		toString.m
update_rule.m		update_rule.m