[performance]: optimize find_HIoIs() #171
Workflow file for this run
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| # Copyright (C) 2024 Roberto Rossini <roberros@uio.no> | |
| # | |
| # SPDX-License-Identifier: MIT | |
| name: Build Dockerfile | |
| on: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/cache-test-datasets.yml" | |
| - ".github/workflows/build-dockerfile.yml" | |
| - "src/**" | |
| - "test/**" | |
| - ".dockerignore" | |
| - ".gitignore" | |
| - "Dockerfile" | |
| - "LICENCE" | |
| - "pyproject.toml" | |
| - "README.md" | |
| tags: | |
| - "v*.*.*" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/cache-test-datasets.yml" | |
| - ".github/workflows/build-dockerfile.yml" | |
| - "src/**" | |
| - "test/**" | |
| - ".dockerignore" | |
| - ".gitignore" | |
| - "Dockerfile" | |
| - "LICENCE" | |
| - "pyproject.toml" | |
| - "README.md" | |
| # https://stackoverflow.com/a/72408109 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| cache-test-datasets: | |
| name: Cache test dataset | |
| uses: paulsengroup/StripePy/.github/workflows/cache-test-datasets.yml@main | |
| build-dockerfile: | |
| name: Build Dockerfile | |
| needs: [cache-test-datasets] | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: "read" | |
| packages: "write" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Generate build requirements | |
| run: | | |
| echo hatchling > requirements.txt | |
| echo hatch_vcs >> requirements.txt | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| cache: pip | |
| - name: Install build requirements | |
| run: pip install -r requirements.txt | |
| - name: Restore test dataset | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.cache-test-datasets.outputs.cache-key }} | |
| path: test/data/ | |
| fail-on-cache-miss: true | |
| enableCrossOsArchive: true | |
| - name: Generate build args | |
| id: build-args | |
| run: | | |
| set -e | |
| set -u | |
| set -o pipefail | |
| BASE_IMAGE='docker.io/library/python:3.13' | |
| docker pull "$BASE_IMAGE" | |
| BASE_IMAGE_DIGEST="$(docker inspect --format='{{index .RepoDigests 0}}' "$BASE_IMAGE" | cut -f 2 -d '@')" | |
| GIT_HASH="$(git rev-parse HEAD)" | |
| GIT_SHORT_HASH="$(git rev-parse --short HEAD)" | |
| CREATION_DATE="$(date --iso-8601)" | |
| VERSION="$(hatchling version)" | |
| REPO='${{ github.repository }}' | |
| REPO_LOWERCASE="${REPO,,}" | |
| CACHE_REGISTRY="ghcr.io/$REPO_LOWERCASE:buildcache" | |
| echo "BASE_IMAGE=$BASE_IMAGE" | tee -a "$GITHUB_OUTPUT" | |
| echo "BASE_IMAGE_DIGEST=$BASE_IMAGE_DIGEST" | tee -a "$GITHUB_OUTPUT" | |
| echo "GIT_HASH=$GIT_HASH" | tee -a "$GITHUB_OUTPUT" | |
| echo "CREATION_DATE=$CREATION_DATE" | tee -a "$GITHUB_OUTPUT" | |
| echo "VERSION=$VERSION" | tee -a "$GITHUB_OUTPUT" | |
| echo "CACHE_REGISTRY_X86=$CACHE_REGISTRY-x86" | tee -a "$GITHUB_OUTPUT" | |
| echo "CACHE_REGISTRY_ARM64=$CACHE_REGISTRY-arm64" | tee -a "$GITHUB_OUTPUT" | |
| echo "REPO_LOWERCASE=$REPO_LOWERCASE" | tee -a "$GITHUB_OUTPUT" | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ steps.build-args.outputs.REPO_LOWERCASE }},ghcr.io/${{ steps.build-args.outputs.REPO_LOWERCASE }} | |
| flavor: | | |
| latest=true | |
| tags: | | |
| type=semver,priority=1000,pattern={{version}} | |
| type=sha,priority=900 | |
| type=ref,priority=700,event=branch | |
| type=ref,priority=600,event=pr | |
| - name: Login to DockerHub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| with: | |
| platforms: linux/amd64,linux/arm64 | |
| - name: Set up QEMU | |
| if: github.event_name != 'pull_request' | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: arm64 | |
| - name: Build Docker image (x86) | |
| if: github.event_name != 'pull_request' | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ${{ github.workspace }} | |
| load: true | |
| push: false | |
| cache-from: type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_X86 }} | |
| cache-to: type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_X86 }},mode=max,compression=zstd | |
| tags: stripepy:x86 | |
| platforms: linux/amd64 | |
| build-args: | | |
| BASE_IMAGE=${{ steps.build-args.outputs.BASE_IMAGE }} | |
| BASE_IMAGE_DIGEST=${{ steps.build-args.outputs.BASE_IMAGE_DIGEST }} | |
| GIT_HASH=${{ steps.build-args.outputs.GIT_HASH }} | |
| CREATION_DATE=${{ steps.build-args.outputs.CREATION_DATE }} | |
| VERSION=${{ steps.build-args.outputs.VERSION }} | |
| - name: Build Docker image (x86; PR) | |
| if: github.event_name == 'pull_request' | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ${{ github.workspace }} | |
| load: true | |
| push: false | |
| cache-from: type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_X86 }} | |
| tags: stripepy:x86 | |
| platforms: linux/amd64 | |
| build-args: | | |
| BASE_IMAGE=${{ steps.build-args.outputs.BASE_IMAGE }} | |
| BASE_IMAGE_DIGEST=${{ steps.build-args.outputs.BASE_IMAGE_DIGEST }} | |
| GIT_HASH=${{ steps.build-args.outputs.GIT_HASH }} | |
| CREATION_DATE=${{ steps.build-args.outputs.CREATION_DATE }} | |
| VERSION=${{ steps.build-args.outputs.VERSION }} | |
| - name: Test Docker image (x86) | |
| run: utils/devel/test_docker_image.sh stripepy:x86 | |
| - name: Build Docker image (arm64) | |
| if: github.event_name != 'pull_request' | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ${{ github.workspace }} | |
| push: false | |
| cache-from: type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_ARM64 }} | |
| cache-to: type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_ARM64 }},mode=max,compression=zstd | |
| tags: stripepy:arm64 | |
| platforms: linux/arm64 | |
| build-args: | | |
| BASE_IMAGE=${{ steps.build-args.outputs.BASE_IMAGE }} | |
| BASE_IMAGE_DIGEST=${{ steps.build-args.outputs.BASE_IMAGE_DIGEST }} | |
| GIT_HASH=${{ steps.build-args.outputs.GIT_HASH }} | |
| CREATION_DATE=${{ steps.build-args.outputs.CREATION_DATE }} | |
| VERSION=${{ steps.build-args.outputs.VERSION }} | |
| - name: Push image to registries | |
| if: github.event_name != 'pull_request' | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ${{ github.workspace }} | |
| push: true | |
| cache-from: | | |
| type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_X86 }} | |
| type=registry,ref=${{ steps.build-args.outputs.CACHE_REGISTRY_ARM64 }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| platforms: linux/amd64,linux/arm64 | |
| build-args: | | |
| BASE_IMAGE=${{ steps.build-args.outputs.BASE_IMAGE }} | |
| BASE_IMAGE_DIGEST=${{ steps.build-args.outputs.BASE_IMAGE_DIGEST }} | |
| GIT_HASH=${{ steps.build-args.outputs.GIT_HASH }} | |
| CREATION_DATE=${{ steps.build-args.outputs.CREATION_DATE }} | |
| VERSION=${{ steps.build-args.outputs.VERSION }} | |
| build-dockerfile-status-check: | |
| name: Status Check (Build Dockerfile) | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-dockerfile | |
| steps: | |
| - name: Collect job results | |
| if: needs.build-dockerfile.result != 'success' | |
| run: exit 1 |