Merge pull request #80 from robomics/rename-package

Rename package from stripepy to stripepy-hic

pyproject.toml

@@ -11,7 +11,7 @@ requires = [
 build-backend = "hatchling.build"
 
 [project]
-name = "stripepy"
+name = "stripepy-hic"
 description = "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning"
 dynamic = ["version"]
 authors = [
@@ -70,11 +70,11 @@ dependencies = [
 test = [
     "pytest",
     "pytest-cov",
-    "stripepy",
+    "stripepy-hic",
 ]
 
 dev = [
-    "stripepy[test]",
+    "stripepy-hic[test]",
     "black[jupyter]",
     "build",
     "isort",

src/stripepy/IO.py

@@ -545,7 +545,7 @@ def init_file(self, matrix_file: hictkpy.File, normalization: Optional[str], met
         self._h5.attrs["format"] = "HDF5::StripePy"
         self._h5.attrs["format-url"] = "https://github.com/paulsengroup/StripePy"
         self._h5.attrs["format-version"] = 1
-        self._h5.attrs["generated-by"] = f"StripePy v{version('stripepy')}"
+        self._h5.attrs["generated-by"] = f"StripePy v{version('stripepy-hic')}"
         self._h5.attrs["metadata"] = json.dumps(metadata, indent=2)
         self._h5.attrs["normalization"] = normalization
 

src/stripepy/__init__.py

@@ -6,4 +6,4 @@
 
 from .main import main
 
-__version__ = version("stripepy")
+__version__ = version("stripepy-hic")

src/stripepy/cli/setup.py

@@ -442,7 +442,7 @@ def _make_cli() -> argparse.ArgumentParser:
         "-v",
         "--version",
         action="version",
-        version="%(prog)s {version}".format(version=version("stripepy")),
+        version="%(prog)s {version}".format(version=version("stripepy-hic")),
     )
 
     return cli