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Implement stripepy download #22

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merged 11 commits into from
Nov 9, 2024

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robomics
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@robomics robomics commented Nov 9, 2024

StripePy download is a new subcommand that aims to simplify downloading datasets that can be used to test StripePy.

Example usage:

# List the available datasets
stripepy download --list-only

# Randomly select and download one of the datasets
stripepy download

# Randomly select and download a dataset using --max-size as upper bound for the file size
stripepy download --max-size 512

# Override the output file location
stripepy download -o my_precious.hic

# Download the given dataset
stripepy download --name 4DNFIOTPSS3L

# Randomly select and download a dataset for the given reference genome
stripepy download --refrence-genome dm6

@robomics robomics added enhancement New feature or request testing PRs modifying tests or test infrastructure labels Nov 9, 2024
@robomics robomics requested a review from rea1991 November 9, 2024 14:31
rea1991
rea1991 previously approved these changes Nov 9, 2024
@rea1991 rea1991 merged commit c427c9c into paulsengroup:main Nov 9, 2024
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@robomics robomics deleted the feature/stripepy-download branch November 9, 2024 16:46
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