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Add OpenBLAS instructions [skip ci]
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Windows users without admin privileges
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seananderson committed May 31, 2024
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3 changes: 2 additions & 1 deletion README.Rmd
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Expand Up @@ -38,7 +38,8 @@ pak::pkg_install("pbs-assess/sdmTMB", dependencies = TRUE)
There are some extra utilities in the [sdmTMBextra](https://github.com/pbs-assess/sdmTMBextra) package.

**Importantly**, it is recommended to use an optimized BLAS library, which will result in major speed improvements for TMB (and other) models in R (e.g., often 8-fold speed increases for sdmTMB models).
Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), and [Windows users](https://github.com/david-cortes/R-openblas-in-windows). To check that you've successfully linked the optimized BLAS, start a new session and run:
Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), [Windows users](https://github.com/david-cortes/R-openblas-in-windows), and [Windows users without admin privileges](https://gist.github.com/seananderson/08a51e296a854f227a908ddd365fb9c1).
To check that you've successfully linked the optimized BLAS, start a new session and run:

```r
m <- 1e4; n <- 1e3; k <- 3e2
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12 changes: 3 additions & 9 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -65,15 +65,9 @@ pak::pkg_install("pbs-assess/sdmTMB", dependencies = TRUE)
There are some extra utilities in the
[sdmTMBextra](https://github.com/pbs-assess/sdmTMBextra) package.

**Importantly**, it is recommended to use an optimized BLAS library,
which will result in major speed improvements for TMB (and other) models
in R (e.g., often 8-fold speed increases for sdmTMB models). Suggested
installation instructions for [Mac
users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html),
[Linux users](https://prdm0.github.io/ropenblas/), and [Windows
users](https://github.com/david-cortes/R-openblas-in-windows). To check
that you’ve successfully linked the optimized BLAS, start a new session
and run:
**Importantly**, it is recommended to use an optimized BLAS library, which will result in major speed improvements for TMB (and other) models in R (e.g., often 8-fold speed increases for sdmTMB models).
Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), [Windows users](https://github.com/david-cortes/R-openblas-in-windows), and [Windows users without admin privileges](https://gist.github.com/seananderson/08a51e296a854f227a908ddd365fb9c1).
To check that you've successfully linked the optimized BLAS, start a new session and run:

``` r
m <- 1e4; n <- 1e3; k <- 3e2
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