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tweaks
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pdimens committed May 20, 2021
1 parent d42f1d8 commit 9a3435e
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4 changes: 2 additions & 2 deletions LepWrap
Original file line number Diff line number Diff line change
Expand Up @@ -16,12 +16,12 @@ if [[ -z "$1" ]]; then
fi

echo "Running Lep-Map3"
sleep 3s
sleep 2s
snakemake --cores $1 --snakefile ./rules/LepMap3.smk --directory .

LA=$(grep "run_lepanchor" config.yaml | cut -d":" -f2 | xargs | tr '[:upper:]' '[:lower:]')
if [ $LA == "true" ]; then
echo -e "\nRunning Lep-Anchor"
sleep 3s
sleep 2s
snakemake --cores $1 --snakefile ./rules/LepAnchor.smk --directory .
fi

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