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Test Harpy Modules

swap simuG to conda-based install #443

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swap simuG to conda-based install

swap simuG to conda-based install #443

Triggered via pull request November 25, 2024 18:17
@pdimenspdimens
synchronize #168
pop_out_simuG
Status Cancelled
Total duration 52m 3s
Artifacts 1

tests.yml

on: pull_request
Detect File Changes
4s
Detect File Changes
Build/Cache Container
28m 55s
Build/Cache Container
demux gen1
9m 17s
demux gen1
preflight
15m 16s
preflight
qc
17m 45s
qc
deconvolve
12m 38s
deconvolve
align BWA
15m 16s
align BWA
align EMA
17m 45s
align EMA
align strobe
13m 34s
align strobe
mpileup
16m 19s
mpileup
freebayes
17m 45s
freebayes
impute
22m 29s
impute
phase
22m 30s
phase
sv leviathan
22m 31s
sv leviathan
sv naibr
22m 30s
sv naibr
simulate variants
22m 29s
simulate variants
simulate linkedreads
17m 41s
simulate linkedreads
metassembly
17m 44s
metassembly
harpy extras
2m 50s
harpy extras
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Annotations

19 errors and 6 warnings
demux gen1
Process completed with exit code 1.
metassembly
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
metassembly
The operation was canceled.
simulate linkedreads
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
simulate linkedreads
The operation was canceled.
freebayes
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
freebayes
The operation was canceled.
align EMA
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
align EMA
The operation was canceled.
qc
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
qc
The operation was canceled.
sv leviathan
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
sv naibr
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
phase
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
impute
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
simulate variants
Canceling since a higher priority waiting request for 'Test Harpy Modules-pop_out_simuG' exists
simulate variants
Process completed with exit code 2.
simulate variants
Process completed with exit code 2.
simulate variants
Process completed with exit code 2.
Detect File Changes
'base' input parameter is ignored when action is triggered by pull request event
sv leviathan
Runner GitHub Actions 6 did not respond to a cancelation request with 00:05:00.
sv naibr
Runner GitHub Actions 9 did not respond to a cancelation request with 00:05:00.
phase
Runner GitHub Actions 8 did not respond to a cancelation request with 00:05:00.
impute
Runner GitHub Actions 16 did not respond to a cancelation request with 00:05:00.
simulate variants
Runner GitHub Actions 4 did not respond to a cancelation request with 00:05:00.

Artifacts

Produced during runtime
Name Size
deps-image Expired
2.32 GB