skip blank line

pdimens · Jul 7, 2024 · cf0d362 · cf0d362
1 parent 3a7087e
commit cf0d362
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/harpy/snakefiles/impute.smk b/src/harpy/snakefiles/impute.smk
@@ -17,7 +17,7 @@ biallelic   = config["inputs"]["biallelic_contigs"]
 skipreports = config["skipreports"]
 outdir      = config["output_directory"]
 envdir      = os.getcwd() + "/.harpy_envs"
-paramspace  = Paramspace(pd.read_csv(paramfile, sep=r"\s+").rename(columns=str.lower), param_sep = "", filename_params="*")
+paramspace  = Paramspace(pd.read_csv(paramfile, sep=r"\s+", skip_blank_lines=True).rename(columns=str.lower), param_sep = "", filename_params="*")
 
 with open(biallelic, "r") as f_open:
     contigs = [i.rstrip() for i in f_open.readlines()]