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pdimens committed Nov 26, 2024
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# :icon-file-diff: Other Harpy modules
Some parts of Harpy (variant calling, imputation) want or need extra files. You can create various files necessary for different modules using these extra modules:
On this page you'll find Harpy functions that aren't standalone workflows. These may create necessary inputs, continue where you left off,
or view important workflow files.

## :icon-terminal: Other modules
{.compact}
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| `popgroup` | Create generic sample-group file using existing sample file names (fq.gz or bam) |
| `view` | View a workflow log, config, or snakefile |


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### imputeparams
Create a template parameter file for the [!badge corners="pill" text="impute"](/Workflows/impute.md) module.
The file is formatted correctly and serves as a starting point for using parameters that make sense for your study.
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[!badge corners="pill" text="resume"] also requires an existing and populated `workdir/envs/` directory in the target directory, like the kind all
main `harpy` workflows would create. If one is not present, you can use `--conda` to create one.

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### popgroup
Creates a sample grouping file for variant calling

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