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pdimens / harpy Public

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fix param call#164

Merged

pdimens merged 37 commits intomainpdimens/harpy:mainfrom

haplotag_lrsimspdimens/harpy:haplotag_lrsimsCopy head branch name to clipboard

Nov 19, 2024

Conversation Commits37 (37)Checks Files changed

Merged

fix param call#164
pdimens merged 37 commits intomainfrom
haplotag_lrsims

Commits

Commits on Nov 15, 2024

fix param call
pdimens
committed
compress
pdimens
committed
clean up the logic a bit
pdimens
committed
add uncompressed
pdimens
committed
better, easier logic
pdimens
committed
swap back to conda
pdimens
committed
improvements and fixes
pdimens
committed
rm bc it can be generated on the fly
pdimens
committed
typo
pdimens
committed
another typo
pdimens
committed
clean up
pdimens
committed
final push to make it work
pdimens
committed
much nicer naming
pdimens
committed

Commits on Nov 18, 2024

add -a for dwgsim, -g for fastafai, comment out error rate
pdimens
committed
rm todo note
pdimens
committed
take 2-col barcode file
pdimens
committed
rm -r
pdimens
committed
update lrsim call
pdimens
committed
fix logic
pdimens
committed
rm len reference
pdimens
committed
rename to HaploSim.pl
pdimens
committed
fix the math
pdimens
committed
fixes
pdimens
committed
rename outputs, make .status not hardcoded
pdimens
committed
clean up
pdimens
committed
refactor the file processing
pdimens
committed
refactor workdirs/names
pdimens
committed
lower barcode count
pdimens
committed
add duplication checking
pdimens
committed
rm from progress bar b/c it'll be misleading
pdimens
committed
rename rule
pdimens
committed
gzip the barcodes
pdimens
committed
revert to dict?
pdimens
committed

Commits on Nov 19, 2024

switch to sqllite3 db for memory efficiency
pdimens
committed
rm status file altogether
pdimens
committed
rm status file
pdimens
committed
fixes
pdimens
committed

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