1.12

What's new (and important)

simulate linkedreads now supports and defaults to haplotagging barcodes

• 84 million barcode options instead of 14m
• support for barcodes of any length, not just the 10X 16bp
• barcode sequencing error has been removed because you're ultimately interested in the linked read data, not the sequencing nuances

Internal

• HaploSim.pl (formerly LRSIM_harpy.pl) focuses solely on creating linked reads from provided haplotypes
• output names for simulate linkedreads more flexible now
• leveraged parameters better in HaploSim.pl
• Added haplotag_barcodes.py to auto-generate haplotag barcodes
• inline to haplotagging conversion uses memory-efficient in-memory sqlite3 database
• barcode validations for align ema and simulate linkedreads

Bugs fixed

• [simulate linkedreads] barcode key generated as a fixed keymap, ensuring barcodes have same haplotag code between different haplotypes

What's Changed

• haplotagging barcodes as default by @pdimens in #162
• better sim demux support by @pdimens in #163
• fix param call by @pdimens in #164

Full Changelog: 1.11...1.12