1.14

New

• added a convenience script separate_singletons to split a bam file into singletons and nonsingletons
• harpy downsample module to downsample FASTQ/BAM by barcodes

Breaking changes

• singletons are now calculated such that both reads of a paired-end read only counts as "one read" for a barcode
  • which means unpaired reads now contribute properly to this value
  • overall, this is a more accurate way of calculating this metric

Fixes

• separate_validbx has a usage change, which is breaking, however this script is not used by any of the workflows so there should be no appreciable difference
• alignment reports have text that clarifies which math is for non-singletons
• multiplex reads (aka reads that arent linked-read singletons) are now just referred to as non-singletons