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@github-actions github-actions released this 11 Dec 20:11
· 7 commits to main since this release
1.14.1
2e8c1b0
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Learn about vigilant mode.

Never too proud to admit I was wrong. I didnt wan't downsample to be a snakemake workflow, but with the increased complexity of what I wanted it to do, I found myself writing an increasingly complex python script that was essentially doing all the stuff Snakemake was doing. So:

New

  • Introduced a command-line utility for extracting barcodes from SAM/BAM files
  • Enhanced phasing statistics reporting with new metrics (N50, N75, N90)
  • LRez is now part of the main Harpy installation and accessible to the user
  • adapter removal in the qc module accepts an argument now, one of:
    • auto for automatic adapter detection
    • a FASTA file of adapters

Changed

  • Downsampling is now a snakemake workflow
  • downsample handles invalids in a much more intuitive (and sensible) way

Full Changelog: 1.14...1.14.1

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