Added fastq how-to and better logging #68
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| name: Run codecov | |
| on: | |
| push: | |
| branches: [dev] | |
| pull_request: | |
| branches: [master] | |
| jobs: | |
| pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [3.11] | |
| os: [ubuntu-latest] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install test dependencies | |
| run: if [ -f requirements/requirements-test.txt ]; then pip install -r requirements/requirements-test.txt; fi | |
| - name: Install package | |
| run: python -m pip install . | |
| - name: Run pytest tests | |
| run: pytest tests --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| name: py-${{ matrix.python-version }}-${{ matrix.os }} |