Added fastq how-to and better logging #68
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name: Run codecov | |
on: | |
push: | |
branches: [dev] | |
pull_request: | |
branches: [master] | |
jobs: | |
pytest: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: [3.11] | |
os: [ubuntu-latest] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install test dependencies | |
run: if [ -f requirements/requirements-test.txt ]; then pip install -r requirements/requirements-test.txt; fi | |
- name: Install package | |
run: python -m pip install . | |
- name: Run pytest tests | |
run: pytest tests --cov=./ --cov-report=xml | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
file: ./coverage.xml | |
name: py-${{ matrix.python-version }}-${{ matrix.os }} |