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clean up svgs, update for readthedocs
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nsheff committed Nov 30, 2023
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10 changes: 10 additions & 0 deletions .readthedocs.yaml
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version: 2
build:
os: ubuntu-22.04
tools:
python: "3.12"
mkdocs:
configuration: mkdocs.yml
python:
install:
- requirements: requirements/requirements-docs.txt
2 changes: 1 addition & 1 deletion README.md
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`geofetch` is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates [standard PEPs](https://pep.databio.org/). `geofetch` is hosted at [pypi](https://pypi.org/project/geofetch/). You can convert the result of geofetch into unmapped `bam` or `fastq` files with the included `sraconvert` command.

Key geofetch features:
## Key geofetch features:

- Works with GEO and SRA metadata
- Combines samples from different projects
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2 changes: 1 addition & 1 deletion docs/README.md
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![](./img/pipeline.svg)

Key geofetch advantages:
## Key geofetch advantages:

- Works with GEO and SRA metadata
- Combines samples from different projects
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