RERconvergeScript.R - Script to Run RERConverge for Vocal Learning Across Mammals 4exp.vlRERAnalyze.4.2.3clean_2024.R - Script to process and visualize the RERConverge and HyPhy Results
AK_allVLresFULL.csv - CSV File of the Vocal Learning RERConverge Results Zoonomia-Hiller_species_name_conversions.csv - Zoonomia species naming convenventions GO_Biological_Process_2023_HyPhy.Conserved.txt - EnrichR Results GO_Biological_Process_2023_HyPhyAccel.txt - EnrichR Results Human_Phenotype_Ontology_HyPhy.Conserved.txt - EnrichR Results Human_Phenotype_Ontology_HyPhyAccel.txt - EnrichR Results
HyPhy - Directory Containing the Results of HyPhy RELAX and BUSTED-P
CombinedZoonomiaFilteredPrunedAATrees_VL.txt - Amino Acid Trees that serve as input. From Zoonomia Consortium (Kirilenko et. al. 2023)