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Last obs before exposure flag and baseline flag (#49)
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* WIP: Baseline flag code adaptation, not functional yet

* WIP: working code, pending tests for baseline logic due to lack of examples

* remove files as added in examples

* modified function

* Harmonize input parameters with other derive_studyday function

* Switched from checkmate to admiraldev assertions; added tests for example + validations

* styler

* lintr fixes

* Fixed baseline visit feature and added a test case

* Run Styler

* Fix pipeline failures

* Fix pipeline failure

* Fix style

* Fix pipeline failure

* fix pipeline failures

* Fix pipeline failures

* Fix styler issues

* Review comments

* Fix errors

* fix spelling

---------

Co-authored-by: Rammprasad Ganapathy <ganapathy.rammprasad@gene.com>
Co-authored-by: Edgar Manukyan <edgar.manukyan@roche.com>
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3 people authored Jun 26, 2024
1 parent 9765aff commit 6abb5ba
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Showing 10 changed files with 1,112 additions and 1 deletion.
4 changes: 3 additions & 1 deletion .lintr
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,8 @@ linters: linters_with_defaults(
redundant_ifelse_linter(),
sprintf_linter(),
strings_as_factors_linter(),
undesirable_function_linter(c(Sys.setenv = NA_character_, mapply = NA_character_))
undesirable_function_linter(c(Sys.setenv = NA_character_, mapply = NA_character_)),
object_name_linter = NULL,
object_usage_linter = NULL
)
encoding: "UTF-8"
2 changes: 2 additions & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,11 @@ export(create_iso8601)
export(ct_map)
export(ct_spec_example)
export(ct_spec_vars)
export(derive_blfl)
export(derive_seq)
export(derive_study_day)
export(domain_example)
export(dtc_timepart)
export(fmt_cmp)
export(generate_oak_id_vars)
export(hardcode_ct)
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